Comparing 14481 FitnessBrowser__Keio:14481 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 6 hits to proteins with known functional sites (download)
P02920 Lactose permease; Lactose-proton symport from Escherichia coli (strain K12) (see 3 papers)
100% identity, 100% coverage: 1:417/417 of query aligns to 1:417/417 of P02920
6vbgB Lactose permease complex with thiodigalactoside and nanobody 9043 (see paper)
97% identity, 98% coverage: 1:409/417 of query aligns to 1:397/397 of 6vbgB
4zyrA Crystal structure of e. Coli lactose permease g46w/g262w bound to p- nitrophenyl alpha-d-galactopyranoside (alpha-npg) (see paper)
95% identity, 93% coverage: 22:408/417 of query aligns to 17:387/387 of 4zyrA
2y5yA Crystal structure of lacy in complex with an affinity inactivator (see paper)
94% identity, 96% coverage: 4:403/417 of query aligns to 1:386/386 of 2y5yA
P16552 Raffinose permease; Raf permease from Escherichia coli (see paper)
58% identity, 96% coverage: 5:404/417 of query aligns to 8:408/425 of P16552
P96517 Melibiose permease; Melibiose transporter MelY from Enterobacter cloacae subsp. cloacae (strain ATCC 13047 / DSM 30054 / NBRC 13535 / NCTC 10005 / WDCM 00083 / NCDC 279-56) (see 2 papers)
60% identity, 96% coverage: 3:401/417 of query aligns to 8:406/425 of P96517
>14481 FitnessBrowser__Keio:14481
MYYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQ
PLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNA
GAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALCASIVGIMFTINNQFVFWLGSGCALIL
AVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFD
QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMS
VRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQL
AMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLRRQVNEVA
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory