SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 14754 FitnessBrowser__Keio:14754 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

P02903 Citrate lyase acyl carrier protein; Citrate lyase gamma chain from Klebsiella pneumoniae (see paper)
51% identity, 77% coverage: 1:75/98 of query aligns to 3:75/97 of P02903

query
sites
P02903
M
 
M
K
 
K
I
 
I
N
 
D
Q
 
-
P
 
-
A
 
A
V
 
L
A
 
A
G
 
G
T
 
T
L
 
L
E
 
E
S
|
S
G
 
S
D
 
D
V
 
V
M
 
M
I
 
V
R
 
R
I
 
I
A
 
G
P
 
P
L
 
A
D
 
A
T
 
Q
Q
 
P
D
 
G
I
 
I
D
 
Q
L
 
L
Q
 
E
I
 
I
N
 
D
S
 
S
S
 
I
V
 
V
E
 
K
K
 
Q
Q
 
Q
F
 
F
G
 
G
D
 
A
A
 
A
I
 
I
R
 
E
T
 
Q
T
 
V
I
 
V
L
 
R
D
 
E
V
 
T
L
 
L
A
 
A
R
 
Q
Y
 
L
N
 
G
V
 
V
R
 
K
G
 
Q
V
 
A
Q
 
N
L
 
V
N
 
V
V
 
V
D
 
D
D
 
D
K
 
K
G
 
G
A
 
A
L
 
L
D
 
E
C
 
C
I
 
V
L
 
L

Query Sequence

>14754 FitnessBrowser__Keio:14754
MKINQPAVAGTLESGDVMIRIAPLDTQDIDLQINSSVEKQFGDAIRTTILDVLARYNVRG
VQLNVDDKGALDCILRARLEALLARASGIPALPWEDCQ

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory