Comparing 14789 b0652 glutamate and aspartate transporter subunit (NCBI) to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
59% identity, 100% coverage: 1:241/241 of query aligns to 2:241/241 of 4u00A
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
58% identity, 100% coverage: 1:240/241 of query aligns to 1:240/240 of 4ymuJ
3c4jA Abc protein artp in complex with atp-gamma-s
55% identity, 100% coverage: 1:240/241 of query aligns to 3:242/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
55% identity, 100% coverage: 1:240/241 of query aligns to 3:242/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
55% identity, 100% coverage: 1:240/241 of query aligns to 3:242/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
55% identity, 100% coverage: 1:240/241 of query aligns to 3:242/242 of 2oljA
1b0uA Atp-binding subunit of the histidine permease from salmonella typhimurium (see paper)
49% identity, 96% coverage: 6:236/241 of query aligns to 7:249/258 of 1b0uA
P02915 Histidine/lysine/arginine/ornithine transport ATP-binding protein HisP; EC 7.4.2.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
49% identity, 96% coverage: 6:236/241 of query aligns to 11:253/258 of P02915
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
36% identity, 100% coverage: 1:241/241 of query aligns to 1:246/343 of P30750
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
36% identity, 100% coverage: 1:241/241 of query aligns to 2:247/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
36% identity, 100% coverage: 1:241/241 of query aligns to 2:247/344 of 3tuiC
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
36% identity, 100% coverage: 1:241/241 of query aligns to 2:247/344 of 6cvlD
5xu1B Structure of a non-canonical abc transporter from streptococcus pneumoniae r6 (see paper)
40% identity, 91% coverage: 1:220/241 of query aligns to 3:226/226 of 5xu1B
6z4wA Ftse structure from streptococcus pneumoniae in complex with adp (space group p 1) (see paper)
34% identity, 94% coverage: 1:226/241 of query aligns to 3:230/230 of 6z4wA
A5U7B7 Cell division ATP-binding protein FtsE from Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) (see 2 papers)
37% identity, 93% coverage: 1:223/241 of query aligns to 1:225/229 of A5U7B7
8igqA Cryo-em structure of mycobacterium tuberculosis adp bound ftsex/ripc complex in peptidisc (see paper)
37% identity, 93% coverage: 1:223/241 of query aligns to 2:226/227 of 8igqA
1f3oA Crystal structure of mj0796 atp-binding cassette (see paper)
39% identity, 93% coverage: 1:223/241 of query aligns to 1:232/232 of 1f3oA
6z67B Ftse structure of streptococcus pneumoniae in complex with amppnp at 2.4 a resolution (see paper)
34% identity, 94% coverage: 1:226/241 of query aligns to 3:229/229 of 6z67B
8iddA Cryo-em structure of mycobacterium tuberculosis atp bound ftsex/ripc complex in peptidisc (see paper)
38% identity, 91% coverage: 1:220/241 of query aligns to 2:223/225 of 8iddA
1l2tA Dimeric structure of mj0796, a bacterial abc transporter cassette (see paper)
40% identity, 89% coverage: 1:214/241 of query aligns to 1:223/230 of 1l2tA
>14789 b0652 glutamate and aspartate transporter subunit (NCBI)
MITLKNVSKWYGHFQVLTDCSTEVKKGEVVVVCGPSGSGKSTLIKTVNGLEPVQQGEITV
DGIVVNDKKTDLAKLRSRVGMVFQHFELFPHLSIIENLTLAQVKVLKRDKAPAREKALKL
LERVGLSAHANKFPAQLSGGQQQRVAIARALCMDPIAMLFDEPTSALDPEMINEVLDVMV
ELANEGMTMMVVTHEMGFARKVANRVIFMDEGKIVEDSPKDAFFDDPKSDRAKDFLAKIL
H
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory