Comparing 14934 b0809 glutamine ABC transporter ATP-binding protein (NCBI) to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
58% identity, 100% coverage: 1:239/240 of query aligns to 1:239/240 of 4ymuJ
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
59% identity, 100% coverage: 1:239/240 of query aligns to 2:239/241 of 4u00A
3c4jA Abc protein artp in complex with atp-gamma-s
55% identity, 100% coverage: 1:239/240 of query aligns to 3:241/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
55% identity, 100% coverage: 1:239/240 of query aligns to 3:241/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
55% identity, 100% coverage: 1:239/240 of query aligns to 3:241/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
55% identity, 100% coverage: 1:239/240 of query aligns to 3:241/242 of 2oljA
1b0uA Atp-binding subunit of the histidine permease from salmonella typhimurium (see paper)
53% identity, 97% coverage: 6:237/240 of query aligns to 7:250/258 of 1b0uA
P02915 Histidine/lysine/arginine/ornithine transport ATP-binding protein HisP; EC 7.4.2.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
53% identity, 97% coverage: 6:237/240 of query aligns to 11:254/258 of P02915
5xu1B Structure of a non-canonical abc transporter from streptococcus pneumoniae r6 (see paper)
46% identity, 90% coverage: 1:217/240 of query aligns to 3:223/226 of 5xu1B
1f3oA Crystal structure of mj0796 atp-binding cassette (see paper)
48% identity, 89% coverage: 1:214/240 of query aligns to 1:223/232 of 1f3oA
1l2tA Dimeric structure of mj0796, a bacterial abc transporter cassette (see paper)
47% identity, 89% coverage: 1:214/240 of query aligns to 1:223/230 of 1l2tA
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
38% identity, 99% coverage: 1:237/240 of query aligns to 1:242/343 of P30750
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
38% identity, 99% coverage: 1:237/240 of query aligns to 2:243/344 of 6cvlD
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
38% identity, 99% coverage: 1:237/240 of query aligns to 2:243/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
38% identity, 99% coverage: 1:237/240 of query aligns to 2:243/344 of 3tuiC
P19566 Maltose/maltodextrin import ATP-binding protein MalK; EC 7.5.2.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
41% identity, 98% coverage: 2:236/240 of query aligns to 4:234/369 of P19566
Sites not aligning to the query:
2awnB Crystal structure of the adp-mg-bound e. Coli malk (crystallized with atp-mg) (see paper)
41% identity, 98% coverage: 2:236/240 of query aligns to 3:233/374 of 2awnB
3puyA Crystal structure of an outward-facing mbp-maltose transporter complex bound to amp-pnp after crystal soaking of the pretranslocation state (see paper)
41% identity, 98% coverage: 2:236/240 of query aligns to 3:233/371 of 3puyA
3puxA Crystal structure of an outward-facing mbp-maltose transporter complex bound to adp-bef3 (see paper)
41% identity, 98% coverage: 2:236/240 of query aligns to 3:233/371 of 3puxA
3puwA Crystal structure of an outward-facing mbp-maltose transporter complex bound to adp-alf4 (see paper)
41% identity, 98% coverage: 2:236/240 of query aligns to 3:233/371 of 3puwA
>14934 b0809 glutamine ABC transporter ATP-binding protein (NCBI)
MIEFKNVSKHFGPTQVLHNIDLNIAQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV
DGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGANKEEAEKLAREL
LAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKMMLFDEPTSALDPELRHEVLKVMQ
DLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGNPQVLIKNPPSQRLQEFLQHVS
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory