Comparing 15937 FitnessBrowser__Keio:15937 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 4 hits to proteins with known functional sites (download)
7dyrZ Cryoem structure of mannose transporter manyz and microcin e492 (mcea) complex (see paper)
100% identity, 97% coverage: 10:283/283 of query aligns to 1:274/274 of 7dyrZ
8hfsZ The structure of lcna, lcia, and the man-pts of lactococcus lactis (see paper)
50% identity, 95% coverage: 6:275/283 of query aligns to 1:297/303 of 8hfsZ
7xnoZ Cryo-em structure of the bacteriocin-receptor-immunity ternary complex from lactobacillus sakei (see paper)
48% identity, 95% coverage: 12:281/283 of query aligns to 4:301/301 of 7xnoZ
7vlxZ Cryo-em structures of listeria monocytogenes man-pts (see paper)
49% identity, 95% coverage: 12:281/283 of query aligns to 1:298/298 of 7vlxZ
>15937 FitnessBrowser__Keio:15937
MVDTTQTTTEKKLTQSDIRGVFLRSNLFQGSWNFERMQALGFCFSMVPAIRRLYPENNEA
RKQAIRRHLEFFNTQPFVAAPILGVTLALEEQRANGAEIDDGAINGIKVGLMGPLAGVGD
PIFWGTVRPVFAALGAGIAMSGSLLGPLLFFILFNLVRLATRYYGVAYGYSKGIDIVKDM
GGGFLQKLTEGASILGLFVMGALVNKWTHVNIPLVVSRITDQTGKEHVTTVQTILDQLMP
GLVPLLLTFACMWLLRKKVNPLWIIVGFFVIGIAGYACGLLGL
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory