SitesBLAST

SitesBLAST – Find functional sites

SitesBLAST

Comparing 16203 b2096 tagatose-bisphosphate aldolase 1 (VIMSS) to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 20 (the maximum) hits to proteins with known functional sites (download)

P0AB74 D-tagatose-1,6-bisphosphate aldolase subunit KbaY; TBPA; TagBP aldolase; D-tagatose-bisphosphate aldolase class II; Ketose 1,6-bisphosphate aldolase class II; Tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli (strain K12) (see paper)
55% identity, 100% coverage: 1:283/284 of query aligns to 1:283/286 of P0AB74

query
sites
P0AB74

M

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D82 (= D82) active site, Proton donor
H83 (= H83) binding
H180 (= H180) binding
H208 (= H208) binding

1gvfB Structure of tagatose-1,6-bisphosphate aldolase (see paper)
54% identity, 99% coverage: 3:283/284 of query aligns to 2:274/275 of 1gvfB

query
sites
1gvfB

V

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active site: D81 (= D82), H82 (= H83), H171 (= H180), H199 (= H208), N221 (= N230)
binding phosphoglycolohydroxamic acid: N23 (= N24), D81 (= D82), H82 (= H83), H171 (= H180), G172 (= G181), H199 (= H208), G200 (= G209), A201 (= A210), S202 (= S211), N221 (= N230), V222 (= V231), A223 (= A232), T224 (= T233)
binding zinc ion: H82 (= H83), H171 (= H180), H199 (= H208)

3q94A The crystal structure of fructose 1,6-bisphosphate aldolase from bacillus anthracis str. 'Ames ancestor'
42% identity, 100% coverage: 1:284/284 of query aligns to 1:285/285 of 3q94A

query
sites
3q94A

M

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active site: D85 (= D82), H86 (= H83), E145 (= E142), H181 (= H180), H209 (= H208), N231 (= N230)
binding zinc ion: H86 (= H83), E114 (≠ A111), H163 (≠ E162), H181 (= H180), H209 (= H208), E235 (= E234), E239 (≠ A238)

P13243 Probable fructose-bisphosphate aldolase; FBP aldolase; FBPA; Fructose-1,6-bisphosphate aldolase; EC 4.1.2.13 from Bacillus subtilis (strain 168) (see paper)
41% identity, 100% coverage: 1:284/284 of query aligns to 1:285/285 of P13243

query
sites
P13243

M

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T212 (≠ S211) modified: Phosphothreonine
T234 (= T233) modified: Phosphothreonine

1rv8B Class ii fructose-1,6-bisphosphate aldolase from thermus aquaticus in complex with cobalt (see paper)
41% identity, 99% coverage: 3:284/284 of query aligns to 2:305/305 of 1rv8B

query
sites
1rv8B

V

L

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x
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A

L

Q

R

K

A

V

L

R

R

S

A

G

G

V

F

R

T

S

S

V

V

M

M

I

I

D

D

A

K

S

S

H

H

L

E

P

D

F

F

A

E

Q

T

N

N

I

V

S

R

R

E

V

T

K
x
R

E

R

V

V

D

E

F

A

C

A

H
|
H

R

A

F

V

D

G

V

V

S

T

V

V

E

E

A

A

E
|
E

L

L

G

G

Q

R

L

L

G

A

G

G

Q

I

E
|
E

D

E

D

H

V

V

Q

A

V

V

N

D

E

E

A

K

D

D

A

A

L

L

Y

L

T

T

N

N

P

P

A

E

Q

E

A

A

R

R

E

I

F

F

A

M

E

E

A

R

T

T

G
|
G

I

A

D

D

S

Y

L

L

A

A

V

V

A

A

I

I

G

G

T

T

A

S

H
|
H

G

G

M

A

Y

Y

A

K

S

G

A

K

-

G

-

R

P

P

A

F

L

I

D

D

F

H

S

A

R

R

L

L

E

E

N

R

I

I

R

A

Q

R

W

L

V

V

N

P

L

A

P

P

L

L

V

V

L

L

H
|
H

G
|
G

A

A

S
|
S

-

A

-

V

-

P

-

E

-

L

-

V

-

E

-

R

-

F

-

R

-

A

-

S

-

G

-

E

-

I

-

G

-

E

-

A

G

G

L

I

S

H

T

P

K

E

D

D

I

I

Q

K

T

A

I

I

K

S

L

L

G

G

I

I

C

A

K

K

I

I

N
|
N

V
x
T

A
x
D

T
|
T

E

D

L

L

K
x
R

N

L

A

A

F

F

S

T

Q

A

A

L

L

I

K

R

N

E

Y

A

L

L

T

N

E

K

H

N

P

P

E

K

A

E

T

F

D

D

P

P

R

R

D

K

Y

Y

L

L

Q

G

S

P

A

A

K

R

S

E

A

A

M

V

R

K

D

E

V

V

S

K

K

S

V

R

I

M

A

E

D

L

C

F

G

G

C

S

E

V

G

G

R

R

A

A

active site: D80 (= D82), H81 (= H83), E140 (= E142), H178 (= H180), H208 (= H208), N251 (= N230)
binding cobalt (ii) ion: H81 (= H83), E132 (= E134), H178 (= H180), H208 (= H208)
binding sulfate ion: S49 (≠ T50), G51 (= G52), R116 (≠ K118), H123 (= H125), G166 (= G168), G209 (= G209), S211 (= S211), N251 (= N230), T252 (≠ V231), D253 (≠ A232), T254 (= T233), R257 (≠ K236)

4to8A Methicillin-resistant staphylococcus aureus class iib fructose 1,6- bisphosphate aldolase (see paper)
41% identity, 99% coverage: 3:284/284 of query aligns to 2:277/279 of 4to8A

query
sites
4to8A

V

L

V

V

S

S

T

M

K

K

Q

E

M

M

L

L

N

I

N

D

A

A

Q

K

R

E

G

N

G

G

Y

Y

A

A

V

V

P

G

A

Q

F

Y

N

N

I

I

H

N

N

N

L

L

E

E

T

F

M

T

Q

Q

V

A

V

I

V

L

E

E

T

A

A

S

A

Q

N

E

L

E

H

N

A

A

P

P

V

V

I

I

I

L

A

G

G

V

T

S

P

E

G

G

T

A

F

A

T

R

H

Y

-

M

A

S

G

G

T

F

E

Y

N

T

L

I

L

V

A

K

L

M

V

V

S

E

A

G

M

L

A

M

K

H

Q

D

Y

L

H

N

H

I

-

T

-

I

P

P

L

V

A

A

I

I

H

H

L

L

D
|
D

H
|
H

H

G

T

S

K

S

F

F

D

E

D

K

I

C

A

K

Q

E

K

A

V

I

R

D

S

A

G

G

V

F

R

T

S

S

V

V

M

M

I

I

D

D

A

A

S

S

H

H

L

S

P

P

F

F

A

E

Q

E

N

N

I

V

S

A

R

T

V

T

K

K

E

K

V

V

D

E

F

Y

C

A

H

H

R

E

F

K

D

G

V

V

S

S

V

V

E

E

A

A

E

E

L

L

G

G

Q

T

L

V

G

G

Q

-

E

-

D

D

V

V

Q

V

V

A

N

D

E

-

A

-

D

G

A

I

L

I

Y

Y

T

A

N

D

P

P

A

K

Q

E

A

C

R

Q

E

E

F

L

A

V

E

E

A

K

T

T

G

G

I

I

D

D

S

A

L

L

A

A

V

P

A

A

I

L

G

G

T

S

A

V

H
|
H

G

G

M

-

Y

-

A

-

S

-

A

-

P

P

A

K

L

L

D

G

F

F

S

K

R

E

L

M

E

E

N

E

I

I

R

G

Q

L

W

S

V

T

N

G

L

L

P

P

L

L

V

V

L

L

H
|
H

G

G

A

G

S

T

G

G

L

I

S

P

T

T

K

K

D

D

I

I

Q

Q

Q

K

T

A

I

I

K

P

L

F

G

G

I

T

C

A

K

K

I

I

N
|
N

V

V

A

N

T

T

E

E

L

N

K

Q

N

I

A

A

F

S

S

A

Q

K

A

A

L

V

K

R

N

D

Y

V

L

L

T

N

E

N

H

D

P

K

E

E

A

V

T

Y

D

D

P

P

R

R

D

K

Y

Y

L

L

Q

G

S

P

A

A

K

R

S

E

A

A

M

I

R

K

D

E

V

T

V

V

S

K

K

G

V

K

I

I

A

K

D

E

C

F

G

G

C

T

E

S

G

N

R

R

A

A

active site: D84 (= D82), H85 (= H83), H178 (= H180), H201 (= H208), N223 (= N230)
binding zinc ion: H85 (= H83), H201 (= H208)

3n9sA Class ii fructose-1,6-bisphosphate aldolase from helicobacter pylori in complex with n-(4-hydroxybutyl)- glycolohydroxamic acid bis- phosphate, a competitive inhibitor (see paper)
35% identity, 98% coverage: 3:280/284 of query aligns to 2:303/307 of 3n9sA

query
sites
3n9sA

V

L

V

V

S

K

T

G

K

N

Q

E

M

I

L

L

N

L

N

K

A

A

Q

H

R

K

G

E

G

G

Y

Y

A

G

V

V

P

G

A

A

F

F

N
|
N

I

F

H

V

N

N

L

F

E

E

T

M

M

L

Q

N

V

A

V

I

V

F

E

E

T

A

A

G

A

N

N

E

L

E

H

N

A

S

P

P

V

L

I

F

I

I

A

Q

G

A

T
x
S

P

E

G

G

T

A

F

I

T

K

H

Y

A

M

G

G

T

I

E

D

N

M

L

A

L

V

A

G

L

M

V

V

S

K

A

I

M

M

A
x
C

K
x
E

Q

R

Y

Y

H

P

H

H

-

I

P

P

L

V

A

A

I

L

H

H

L

L

D
|
D

H
|
H

H

G

T

T

K

T

F

F

D

E

D

S

I

C

A

E

Q

K

K

A

V

V

R

K

S

A

G

G

V

F

R

T

S

S

V

V

M

M

I

I

D
|
D

A

A

S
|
S

H

H

L

H

P

A

F

F

A

E

Q

E

N

N

I

L

S

E

R

L

V

T

K

S

E

K

V

V

D

K

F

M

C

A

H

H

R

N

F

A

D

G

V

V

S

S

V

V

E

E

A

A

E
|
E

L

L

G
|
G

Q

R

L

L

G

M

G

G

Q

I

E

E

D

D

D

N

V

I

Q

S

V

V

N

D

E

E

A

K

D

D

A

A

L

V

Y

L

T

V

N

N

P

P

A

K

Q

E

A

A

R

E

E

Q

F

F

A

V

E

K

A

E

T

S

G

Q

I

V

D

D

S

Y

L

L

A

A

V

P

A

A

I

I

G

G

T

T

A

S

H
|
H

G
|
G

-

A

-

F

M
x
K

Y

F

A

K

S

G

A

E

P

P

A

K

L

L

D

D

F

F

S

E

R

R

L

L

E

Q

N

E

I

V

R

K

Q

R

W

L

V

T

N

N

L

I

P

P

L

L

V

V

L

L

H
|
H

G
|
G

A
|
A

S
|
S

-

A

-

I

-

P

-

D

-

N

-

V

-

R

-

K

-

S

-

Y

-

L

-

D

-
x
A

-

G

-

D

-

L

-

K

-

G

-

S

-

K

G

G

L

V

S

P

T

F

K

E

D

F

I

L

Q

Q

Q

E

T

S

I

V

K

K

L

G

G

G

I

I

C

N

K

K

I

V

N
|
N

V
x
T

A
x
D

T
|
T

E

D

L

L

K

R

N

I

A

A

F

F

S

I

Q

A

A

E

L

V

K

R

N

K

Y

V

L

A

T

N

E

E

H

D

P

K

E

S

A

Q

T

F

D

D

P

L

R

R

D

K

Y

F

L

F

Q

S

S

P

A

A

K

Q

S

L

A

A

M

L

R

K

D

N

V

V

S

K

K

E

V

R

I

M

A

K

D

L

C

L

G

G

C

S

active site: C69 (≠ A70), E70 (≠ K71), G136 (= G136), H180 (= H180), A226 (vs. gap), N253 (= N230)
binding calcium ion: D104 (= D104), S106 (= S106), E134 (= E134)
binding 4-{hydroxy[(phosphonooxy)acetyl]amino}butyl dihydrogen phosphate: N23 (= N24), S49 (≠ T50), D82 (= D82), H83 (= H83), H180 (= H180), G181 (= G181), K184 (≠ M182), H210 (= H208), G211 (= G209), A212 (= A210), S213 (= S211), N253 (= N230), T254 (≠ V231), D255 (≠ A232), T256 (= T233)
binding zinc ion: H83 (= H83), H180 (= H180), H210 (= H208)

A8B2U2 Fructose-bisphosphate aldolase; Glfba; glFBPA; Fructose-1,6-bisphosphate aldolase; EC 4.1.2.13 from Giardia intestinalis (strain ATCC 50803 / WB clone C6) (Giardia lamblia) (see 4 papers)
37% identity, 100% coverage: 1:284/284 of query aligns to 1:307/323 of A8B2U2

query
sites
A8B2U2

M

M

Y

P

V

L

V

C

S

T

T

L

K

R

Q

Q

M

M

L

L

N

G

N

E

A

A

Q

R

R

K

G

H

G

K

Y

Y

A

G

V

V

P

G

A

A

F

F

N

N

I

V

H

N

N

N

L

M

E

E

T

Q

M

I

Q

Q

V

G

V

I

V

M

E

K

T

A

A

V

N

Q

L

L

H

K

A

S

P

P

V

V

I

I

I

L

A

Q

G

C

T
x
S

P

R

G

G

T

A

F

L

T

K

H

Y

A

S

G

D

T

M

E

I

N

Y

L

L

L

K

A

K

L

L

V

C

-

E

S

A

A

A

M

L

A

E

K

K

Q

H

Y

P

H

D

H

I

P

P

L

I

A

C

I

I

H

H

L

L

D
|
D

H
|
H

H

G

T

D

K

T

F

L

D

E

D

S

I

V

A

K

Q

M

K

A

V

I

R

D

S

L

G

G

V

F

R

S

S

S

V

V

M

M

I

I

D

D

A

A

S

S

H

H

L

H

P

P

F

F

A

D

Q

E

N

N

I

V

S

R

R

I

V

T

K

K

E

E

V

V

D

A

F

Y

C

A

H

H

R

A

F

R

D

G

V

V

S

S

V

V

E

E

A

A

E

E

L

L

G

G

Q

T

L

L

G

G

Q

I

E

E

D

E

D

D

V

V

Q

Q

V

N

N

T

E

-

A

-

D

-

A

V

L

Q

Y

L

T

T

N

E

P

P

A

Q

Q

D

A

A

R

K

E

K

F

F

A

V

E

E

A

L

T

T

G

G

I

V

D

D

S

A

L

L

A

A

V

V

A

A

I

I

G

G

T

T

A

S

H
|
H

G
|
G

M

A

Y

Y

A
x
K

-

F

-

K

-

S

-

E

S

S

A

D

P

I

A

R

L

L

D

A

F

I

S

D

R

R

L

V

E

K

N

T

I

I

R

S

Q

D

W

L

V

T

N

G

L

I

P

P

L

L

V

V

L

M

H
|
H

G
|
G

A

S

S
|
S

-

S

-

V

-

P

-

K

-

D

-

V

-

K

-

D

-

M

-

I

-

N

-

K

-

Y

-

G

-

K

-

M

-

P

-

D

-

A

-

V

G

G

L

V

S

P

T

I

K

E

D

S

I

I

Q

V

Q

H

T

A

I

I

K

G

L

E

G

G

I

V

C

C

K

K

I

I

N
|
N

V

V

A
x
D

T
x
S

E

D

L

S

K
x
R

N

M

A

A

F

M

S

T

Q

G

A

A

L

I

K

R

N

K

Y

V

L

F

T

V

E

E

H

H

P

P

E

E

A

K

T

F

D
|
D

P

P

R
|
R

D

D

Y

Y

L

L

Q

G

S

P

A

G

K

R

S

D

A

A

M

I

R

T

D

E

V

M

V

L

S

I

K

P

V

K

I

I

A

K

D

A

C

F

G

G

C

S

E

A

G

G

R

H

A

A

S50 (≠ T50) binding
D83 (= D82) active site, Proton donor; mutation to A: Severe loss of catalytic activity.
H84 (= H83) binding
H178 (= H180) binding ; binding
G179 (= G181) binding
K182 (≠ A184) binding
H210 (= H208) binding
G211 (= G209) binding
S213 (= S211) binding
N253 (= N230) binding
D255 (≠ A232) binding ; mutation to A: 9.4-fold reduction in substrate affinity and 50-fold reduction in catalytic affinity. Has some activity towards tagatose-1,6-bisphosphate.
S256 (≠ T233) binding
R259 (≠ K236) binding ; mutation to A: 1.8-fold reduction in substrate affinity and 2.8-fold reduction in catalytic efficiency. 6-fold reduction in substrate affinity and 24-fold reduction in catalytic efficiency; when associated with A-278.
D278 (= D255) mutation to A: 159-fold reduction in substrate affinity and 2770-fold reduction in catalytic efficiency. 6-fold reduction in substrate affinity and 24-fold reduction in catalytic efficiency; when associated with A-259.
R280 (= R257) binding

3gb6A Structure of giardia fructose-1,6-biphosphate aldolase d83a mutant in complex with fructose-1,6-bisphosphate (see paper)
36% identity, 99% coverage: 3:284/284 of query aligns to 2:302/318 of 3gb6A

query
sites
3gb6A

V

L

V

C

S

T

T

L

K

R

Q

Q

M

M

L

L

N

G

N

E

A

A

Q

R

R

K

G

H

G

K

Y

Y

A

G

V

V

P

G

A

A

F

F

N
|
N

I

V

H

N

N

N

L

M

E

E

T

Q

M

I

Q

Q

V

G

V

I

V

M

E

K

T

A

A

V

N

Q

L

L

H

K

A

S

P

P

V

V

I

I

I

L

A
x
Q

G

C

T
x
S

P

R

G

G

T

A

F

L

T

K

H

Y

A

S

G

D

T

M

E

I

N

Y

L

L

L

K

A

K

L

L

V

C

-

E

S

A

A

A

M

L

A

E

K

K

Q

H

Y

P

H

D

H

I

P

P

L

I

A

C

I

I

H

H

L

L

D

A

H

H

H

G

T

D

K

T

F

L

D

E

D

S

I

V

A

K

Q

M

K

A

V

I

R

D

S

L

G

G

V

F

R

S

S

S

V

V

M

M

I

I

D

D

A

A

S

S

H

H

L

H

P

P

F

F

A

D

Q

E

N

N

I

V

S

R

R

I

V

T

K

K

E

E

V

V

D

A

F

Y

C

A

H

H

R

A

F

R

D

G

V

V

S

S

V

V

E

E

A

A

E

E

L

L

G

G

Q

T

L

L

G

G

Q

I

E

E

D

N

D

T

V

V

Q

Q

V

L

N

T

E

E

A

-

D

-

A

-

L

-

Y

-

T

-

N

-

P

P

A

Q

Q

D

A

A

R

K

E

K

F

F

A

V

E

E

A

L

T

T

G

G

I

V

D

D

S

A

L

L

A

A

V

V

A

A

I

I

G

G

T

T

A

S

H
|
H

G
|
G

M

A

Y

Y

A
x
K

-

F

-

K

-

S

-

E

S

S

A

D

P

I

A

R

L

L

D

A

F

I

S

D

R

R

L

V

E

K

N

T

I

I

R

S

Q

D

W

L

V

T

N

G

L

I

P

P

L

L

V

V

L

M

H
|
H

G
|
G

A
x
S

S
|
S

-

S

-

V

-

P

-

K

-

D

-

V

-

K

-

D

-

M

-

I

-

N

-

K

-

Y

-

G

-

K

-

M

-

P

-

D

-

A

-

V

G

G

L

V

S

P

T

I

K

E

D

S

I

I

Q

V

Q

H

T

A

I

I

K

G

L

E

G

G

I

V

C

C

K

K

I

I

N
|
N

V
|
V

A
x
D

T
x
S

E

D

L

S

K
x
R

N

M

A

A

F

M

S

T

Q

G

A

A

L

I

K

R

N

K

Y

V

L

F

T

V

E

E

H

H

P

P

E

E

A

K

T

F

D

D

P

P

R

R

D

D

Y

Y

L

L

Q

G

S

P

A

G

K

R

S

D

A

A

M

I

R

T

D

E

V

M

V

L

S

I

K

P

V

K

I

I

A

K

D

A

C

F

G

G

C

S

E

A

G

G

R

H

A

A

binding 1,6-di-O-phosphono-D-fructose: N23 (= N24), Q47 (≠ A48), S49 (≠ T50), H173 (= H180), G174 (= G181), K177 (≠ A184), H205 (= H208), G206 (= G209), S207 (≠ A210), S208 (= S211), N248 (= N230), V249 (= V231), D250 (≠ A232), S251 (≠ T233), R254 (≠ K236)

3ohiA Structure of giardia fructose-1,6-biphosphate aldolase in complex with 3-hydroxy-2-pyridone (see paper)
36% identity, 99% coverage: 3:284/284 of query aligns to 2:303/319 of 3ohiA

query
sites
3ohiA

V

L

V

C

S

T

T

L

K

R

Q

Q

M

M

L

L

N

G

N

E

A

A

Q

R

R

K

G

H

G

K

Y

Y

A

G

V

V

P

G

A

A

F

F

N
|
N

I

V

H

N

N

N

L

M

E

E

T

Q

M

I

Q

Q

V

G

V

I

V

M

E

K

T

A

A

V

N

Q

L

L

H

K

A

S

P

P

V

V

I

I

I

L

A

Q

G

C

T
x
S

P

R

G

G

T

A

F

L

T

K

H

Y

A

S

G

D

T

M

E

I

N

Y

L

L

L

K

A

K

L

L

V

C

-

E

S

A

A

A

M

L

A

E

K

K

Q

H

Y

P

H

D

H

I

P

P

L

I

A

C

I

I

H

H

L

L

D
|
D

H
|
H

H

G

T

D

K

T

F

L

D

E

D

S

I

V

A

K

Q

M

K

A

V

I

R

D

S

L

G

G

V

F

R

S

S

S

V

V

M

M

I

I

D

D

A

A

S

S

H

H

L

H

P

P

F

F

A

D

Q

E

N

N

I

V

S

R

R

I

V

T

K

K

E

E

V

V

D

A

F

Y

C

A

H

H

R

A

F

R

D

S

V

V

S

S

V

V

E

E

A

A

E

E

L

L

G

G

Q

T

L

L

G

G

-

I

Q

E

E

Q

D

N

D

T

V

V

Q

Q

V

L

N

T

E

E

A

-

D

-

A

-

L

-

Y

-

T

-

N

-

P

P

A

Q

Q

D

A

A

R

K

E

K

F

F

A

V

E

E

A

L

T

T

G

G

I

V

D

D

S

A

L

L

A

A

V

V

A

A

I

I

G

G

T

T

A

S

H
|
H

G
|
G

M

A

Y

Y

A
x
K

-

F

-

K

-

S

-

E

S

S

A

D

P

I

A

R

L

L

D

A

F

I

S

D

R

R

L

V

E

K

N

T

I

I

R

S

Q

D

W

L

V

T

N

G

L

I

P

P

L

L

V

V

L

M

H
|
H

G
|
G

A
x
S

S
|
S

-

S

-

V

-

P

-

K

-

D

-

V

-

K

-

D

-

M

-

I

-

N

-

K

-

Y

-

G

-

K

-

M

-

P

-

D

-

A

-

V

G

G

L

V

S

P

T

I

K

E

D

S

I

I

Q

V

Q

H

T

A

I

I

K

G

L

E

G

G

I

V

C

C

K

K

I

I

N
|
N

V
|
V

A
x
D

T
x
S

E

D

L

S

K
x
R

N

M

A

A

F

M

S

T

Q

G

A

A

L

I

K

R

N

K

Y

V

L

F

T

V

E

E

H

H

P

P

E

E

A

K

T

F

D

D

P

P

R

R

D

D

Y

Y

L

L

Q

G

S

P

A

G

K

R

S

D

A

A

M

I

R

T

D

E

V

M

V

L

S

I

K

P

V

K

I

I

A

K

D

A

C

F

G

G

C

S

E

A

G

G

R

H

A

A

binding ({3-hydroxy-2-oxo-4-[2-(phosphonooxy)ethyl]pyridin-1(2H)-yl}methyl)phosphonic acid: N23 (= N24), S49 (≠ T50), D82 (= D82), H83 (= H83), H174 (= H180), G175 (= G181), K178 (≠ A184), H206 (= H208), G207 (= G209), S208 (≠ A210), S209 (= S211), N249 (= N230), V250 (= V231), D251 (≠ A232), S252 (≠ T233), R255 (≠ K236)
binding zinc ion: H83 (= H83), H174 (= H180), H206 (= H208)

3gayA Structure of giardia fructose-1,6-biphosphate aldolase in complex with tagatose-1,6-biphosphate (see paper)
36% identity, 99% coverage: 3:284/284 of query aligns to 2:303/319 of 3gayA

query
sites
3gayA

V

L

V

C

S

T

T

L

K

R

Q

Q

M

M

L

L

N

G

N

E

A

A

Q

R

R

K

G

H

G

K

Y

Y

A

G

V

V

P

G

A

A

F

F

N
|
N

I

V

H

N

N

N

L

M

E

E

T

Q

M

I

Q

Q

V

G

V

I

V

M

E

K

T

A

A

V

N

Q

L

L

H

K

A

S

P

P

V

V

I

I

I

L

A
x
Q

G

C

T
x
S

P

R

G

G

T

A

F

L

T

K

H

Y

A

S

G

D

T

M

E

I

N

Y

L

L

L

K

A

K

L

L

V

C

-

E

S

A

A

A

M

L

A

E

K

K

Q

H

Y

P

H

D

H

I

P

P

L

I

A

C

I

I

H

H

L

L

D
|
D

H
|
H

H

G

T

D

K

T

F

L

D

E

D

S

I

V

A

K

Q

M

K

A

V

I

R

D

S

L

G

G

V

F

R

S

S

S

V

V

M

M

I

I

D

D

A

A

S

S

H

H

L

H

P

P

F

F

A

D

Q

E

N

N

I

V

S

R

R

I

V

T

K

K

E

E

V

V

D

A

F

Y

C

A

H

H

R

A

F

R

D

G

V

V

S

S

V

V

E

E

A

A

E

E

L

L

G

G

Q

T

L

L

G

G

-

I

Q

E

E

Q

D

N

D

T

V

V

Q

Q

V

L

N

T

E

E

A

-

D

-

A

-

L

-

Y

-

T

-

N

-

P

P

A

Q

Q

D

A

A

R

K

E

K

F

F

A

V

E

E

A

L

T

T

G

G

I

V

D

D

S

A

L

L

A

A

V

V

A

A

I

I

G

G

T

T

A

S

H
|
H

G
|
G

M

A

Y

Y

A
x
K

-

F

-

K

-

S

-

E

S

S

A

D

P

I

A

R

L

L

D

A

F

I

S

D

R

R

L

V

E

K

N

T

I

I

R

S

Q

D

W

L

V

T

N

G

L

I

P

P

L

L

V

V

L

M

H
|
H

G
|
G

A
x
S

S
|
S

-

S

-

V

-

P

-

K

-

D

-

V

-

K

-

D

-

M

-

I

-

N

-

K

-

Y

-

G

-

K

-

M

-

P

-

D

-

A

-

V

G

G

L

V

S

P

T

I

K

E

D

S

I

I

Q

V

Q

H

T

A

I

I

K

G

L

E

G

G

I

V

C

C

K

K

I

I

N
|
N

V
|
V

A
x
D

T
x
S

E

D

L

S

K
x
R

N

M

A

A

F

M

S

T

Q

G

A

A

L

I

K

R

N

K

Y

V

L

F

T

V

E

E

H

H

P

P

E

E

A

K

T

F

D

D

P

P

R

R

D

D

Y

Y

L

L

Q

G

S

P

A

G

K

R

S

D

A

A

M

I

R

T

D

E

V

M

V

L

S

I

K

P

V

K

I

I

A

K

D

A

C

F

G

G

C

S

E

A

G

G

R

H

A

A

binding 1,6-di-O-phosphono-D-tagatose: N23 (= N24), Q47 (≠ A48), S49 (≠ T50), D82 (= D82), H83 (= H83), H174 (= H180), G175 (= G181), K178 (≠ A184), H206 (= H208), G207 (= G209), S208 (≠ A210), S209 (= S211), N249 (= N230), V250 (= V231), D251 (≠ A232), S252 (≠ T233), R255 (≠ K236)
binding zinc ion: H83 (= H83), H174 (= H180), H206 (= H208)

2isvB Structure of giardia fructose-1,6-biphosphate aldolase in complex with phosphoglycolohydroxamate (see paper)
36% identity, 99% coverage: 3:284/284 of query aligns to 2:292/307 of 2isvB

query
sites
2isvB

V

L

V

C

S

T

T

L

K

R

Q

Q

M

M

L

L

N

G

N

E

A

A

Q

R

R

K

G

H

G

K

Y

Y

A

G

V

V

P

G

A

A

F

F

N
|
N

I

V

H

N

N

N

L

M

E

E

T

Q

M

I

Q

Q

V

G

V

I

V

M

E

K

T

A

A

V

N

Q

L

L

H

K

A

S

P

P

V

V

I

I

I

L

A
x
Q

G

C

T

S

P

R

G

G

T

A

F

L

T

K

H

Y

A

S

G

D

T

M

E

I

N

Y

L

L

L

K

A

K

L

L

V

C

-

E

S

A

A

A

M

L

A

E

K

K

Q

H

Y

P

H

D

H

I

P

P

L

I

A

C

I

I

H

H

L

L

D
|
D

H
|
H

H

G

T

D

K

T

F

L

D

E

D

S

I

V

A

K

Q

M

K

A

V

I

R

D

S

L

G

G

V

F

R

S

S

S

V

V

M

M

I

I

D

D

A

A

S

S

H

H

L

H

P

P

F

F

A

D

Q

E

N

N

I

V

S

R

R

I

V

T

K

K

E

E

V

V

D

A

F

Y

C

A

H

H

R

A

F

R

D

S

V

V

S

S

V

V

E

E

A

A

E

E

L

L

G

G

Q

Q

L

-

G

-

Q

-

E

-

D

N

D

T

V

V

Q

Q

V

L

N

T

E

E

A

-

D

-

A

-

L

-

Y

-

T

-

N

-

P

P

A

Q

Q

D

A

A

R

K

E

K

F

F

A

V

E

E

A

L

T

T

G

G

I

V

D

D

S

A

L

L

A

A

V

V

A

A

I

I

G

G

T

T

A

S

H
|
H

G
|
G

M

A

Y

Y

A
x
K

S

F

A

I

P

-

A

R

L

L

D

A

F

I

S

D

R

R

L

V

E

K

N

T

I

I

R

S

Q

D

W

L

V

T

N

G

L

I

P

P

L

L

V

V

L

M

H
|
H

G
|
G

A
x
S

S
|
S

-

S

-

V

-

P

-

K

-

D

-

V

-

K

-

D

-

M

-

I

-

N

-

K

-

Y

-

G

-

K

-

M

-

P

-

D

-

A

-

V

G

G

L

V

S

P

T

I

K

E

D

S

I

I

Q

V

Q

H

T

A

I

I

K

G

L

E

G

G

I

V

C

C

K

K

I

I

N
|
N

V
|
V

A
x
D

T
x
S

E

D

L

S

K

R

N

M

A

A

F

M

S

T

Q

G

A

A

L

I

K

R

N

K

Y

V

L

F

T

V

E

E

H

H

P

P

E

E

A

K

T

F

D

D

P

P

R

R

D

D

Y

Y

L

L

Q

G

S

P

A

G

K

R

S

D

A

A

M

I

R

T

D

E

V

M

V

L

S

I

K

P

V

K

I

I

A

K

D

A

C

F

G

G

C

S

E

A

G

G

R

H

A

A

binding phosphoglycolohydroxamic acid: N23 (= N24), Q47 (≠ A48), D82 (= D82), H83 (= H83), H168 (= H180), G169 (= G181), K172 (≠ A184), H195 (= H208), G196 (= G209), S197 (≠ A210), S198 (= S211), N238 (= N230), V239 (= V231), D240 (≠ A232), S241 (≠ T233)
binding zinc ion: H83 (= H83), H168 (= H180), H195 (= H208)

3n9rA Class ii fructose-1,6-bisphosphate aldolase from helicobacter pylori in complex with n-(4-hydroxybutyl)-phosphoglycolohydroxamic acid, a competitive inhibitor (see paper)
33% identity, 98% coverage: 3:280/284 of query aligns to 2:293/297 of 3n9rA

query
sites
3n9rA

V

L

V

V

S

K

T

G

K

N

Q

E

M

I

L

L

N

L

N

K

A

A

Q

H

R

K

G

E

G

G

Y

Y

A

G

V

V

P

G

A

A

F

F

N

N

I

F

H

V

N

N

L

F

E

E

T

M

M

L

Q

N

V

A

V

I

V

F

E

E

T

A

A

G

A

N

N

E

L

E

H

N

A

S

P

P

V

L

I

F

I

I

A

Q

G

A

T

S

P

E

G

G

T

A

F

I

T

K

H

Y

A

M

G

G

T

I

E

D

N

M

L

A

L

V

A

G

L

M

V

V

S

K

A

I

M

M

A
x
C

K
x
E

Q

R

Y

Y

H

P

H

H

-

I

P

P

L

V

A

A

I

L

H

H

L

L

D
|
D

H
|
H

H

G

T

T

K

T

F

F

D

E

D

S

I

C

A

E

Q

K

K

A

V

V

R

K

S

A

G

G

V

F

R

T

S

S

V

V

M

M

I

I

D

D

A

A

S

S

H

H

L

H

P

A

F

F

A

E

Q

E

N

N

I

L

S

E

R

L

V

T

K

S

E

K

V

V

D

K

F

M

C

A

H

H

R

N

F

A

D

G

V

V

S

S

V

V

E

E

A

A

E

E

L

L

G
|
G

Q

R

L

L

G

M

G

G

Q

I

E

-

D

-

V

-

Q

-

V

-

N

-

E

-

A

-

D

-

A

A

L

V

Y

L

T

V

N

N

P

P

A

K

Q

E

A

A

R

E

E

Q

F

F

A

V

E

K

A

E

T

S

G

Q

I

V

D

D

S

Y

L

L

A

A

V

P

A

A

I

I

G

G

T

T

A

S

H
|
H

G
|
G

-

A

-

F

M
x
K

Y

F

A

K

S

G

A

E

P

P

A

K

L

L

D

D

F

F

S

E

R

R

L

L

E

Q

N

E

I

V

R

K

Q

R

W

L

V

T

N

N

L

I

P

P

L

L

V

V

L

L

H
|
H

G
|
G

A
|
A

S
|
S

-

A

-

I

-

P

-

D

-

N

-

V

-

R

-

K

-

S

-

Y

-

L

-

D

-
x
A

-

G

-

D

-

L

-

K

-

G

-

S

-

K

G

G

L

V

S

P

T

F

K

E

D

F

I

L

Q

Q

Q

E

T

S

I

V

K

K

L

G

G

G

I

I

C

N

K

K

I

V

N
|
N

V
x
T

A
x
D

T
|
T

E

D

L

L

K

R

N

I

A

A

F

F

S

I

Q

A

A

E

L

V

K

R

N

K

Y

V

L

A

T

N

E

E

H

D

P

K

E

S

A

Q

T

F

D

D

P

L

R

R

D

K

Y

F

L

F

Q

S

S

P

A

A

K

Q

S

L

A

A

M

L

R

K

D

N

V

V

S

K

K

E

V

R

I

M

A

K

D

L

C

L

G

G

C

S

active site: C69 (≠ A70), E70 (≠ K71), G136 (= G136), H170 (= H180), A216 (vs. gap), N243 (= N230)
binding 2-[hydroxy(4-hydroxybutyl)amino]-2-oxoethyl dihydrogen phosphate: D82 (= D82), H83 (= H83), H170 (= H180), G171 (= G181), K174 (≠ M182), H200 (= H208), G201 (= G209), A202 (= A210), S203 (= S211), N243 (= N230), T244 (≠ V231), D245 (≠ A232), T246 (= T233)
binding zinc ion: H83 (= H83), H170 (= H180), H200 (= H208)

3c56A Class ii fructose-1,6-bisphosphate aldolase from helicobacter pylori in complex with n-(3-hydroxypropyl)-glycolohydroxamic acid bisphosphate, a competitive inhibitor (see paper)
33% identity, 98% coverage: 3:280/284 of query aligns to 2:293/297 of 3c56A

query
sites
3c56A

V

L

V

V

S

K

T

G

K

N

Q

E

M

I

L

L

N

L

N

K

A

A

Q

H

R

K

G

E

G

G

Y

Y

A

G

V

V

P

G

A

A

F

F

N
|
N

I

F

H

V

N

N

L

F

E

E

T

M

M

L

Q

N

V

A

V

I

V

F

E

E

T

A

A

G

A

N

N

E

L

E

H

N

A

S

P

P

V

L

I

F

I

I

A

Q

G

A

T
x
S

P

E

G

G

T

A

F

I

T

K

H

Y

A

M

G

G

T

I

E

D

N

M

L

A

L

V

A

G

L

M

V

V

S

K

A

I

M

M

A
x
C

K
x
E

Q

R

Y

Y

H

P

H

H

-

I

P

P

L

V

A

A

I

L

H

H

L

L

D
|
D

H
|
H

H

G

T

T

K

T

F

F

D

E

D

S

I

C

A

E

Q

K

K

A

V

V

R

K

S

A

G

G

V

F

R

T

S

S

V

V

M

M

I

I

D

D

A

A

S

S

H

H

L

H

P

A

F

F

A

E

Q

E

N

N

I

L

S

E

R

L

V

T

K

S

E

K

V

V

D

K

F

M

C

A

H

H

R

N

F

A

D

G

V

V

S

S

V

V

E

E

A

A

E

E

L

L

G
|
G

Q

R

L

L

G

M

G

G

Q

I

E

-

D

-

V

-

Q

-

V

-

N

-

E

-

A

-

D

-

A

A

L

V

Y

L

T

V

N

N

P

P

A

K

Q

E

A

A

R

E

E

Q

F

F

A

V

E

K

A

E

T

S

G

Q

I

V

D

D

S

Y

L

L

A

A

V

P

A

A

I

I

G

G

T

T

A

S

H
|
H

G
|
G

-

A

-

F

M
x
K

Y

F

A

K

S

G

A

E

P

P

A

K

L

L

D

D

F

F

S

E

R

R

L

L

E

Q

N

E

I

V

R

K

Q

R

W

L

V

T

N

N

L

I

P

P

L

L

V

V

L

L

H
|
H

G
|
G

A
|
A

S
|
S

-

A

-

I

-

P

-

D

-

N

-

V

-

R

-

K

-

S

-

Y

-

L

-

D

-
x
A

-

G

-

D

-

L

-

K

-

G

-

S

-

K

G

G

L

V

S

P

T

F

K

E

D

F

I

L

Q

Q

Q

E

T

S

I

V

K

K

L

G

G

G

I

I

C

N

K

K

I

V

N
|
N

V
x
T

A
x
D

T
|
T

E

D

L

L

K
x
R

N

I

A

A

F

F

S

I

Q

A

A

E

L

V

K

R

N

K

Y

V

L

A

T

N

E

E

H

D

P

K

E

S

A

Q

T

F

D

D

P

L

R

R

D

K

Y

F

L

F

Q

S

S

P

A

A

K

Q

S

L

A

A

M

L

R

K

D

N

V

V

S

K

K

E

V

R

I

M

A

K

D

L

C

L

G

G

C

S

active site: C69 (≠ A70), E70 (≠ K71), G136 (= G136), H170 (= H180), A216 (vs. gap), N243 (= N230)
binding 3-{hydroxy[(phosphonooxy)acetyl]amino}propyl dihydrogen phosphate: N23 (= N24), S49 (≠ T50), D82 (= D82), H83 (= H83), H170 (= H180), G171 (= G181), K174 (≠ M182), H200 (= H208), G201 (= G209), A202 (= A210), S203 (= S211), N243 (= N230), T244 (≠ V231), D245 (≠ A232), T246 (= T233), R249 (≠ K236)
binding zinc ion: H83 (= H83), H170 (= H180), H200 (= H208)

3c52A Class ii fructose-1,6-bisphosphate aldolase from helicobacter pylori in complex with phosphoglycolohydroxamic acid, a competitive inhibitor (see paper)
33% identity, 98% coverage: 3:280/284 of query aligns to 2:292/296 of 3c52A

query
sites
3c52A

V

L

V

V

S

K

T

G

K

N

Q

E

M

I

L

L

N

L

N

K

A

A

Q

H

R

K

G

E

G

G

Y

Y

A

G

V

V

P

G

A

A

F

F

N

N

I

F

H

V

N

N

L

F

E

E

T

M

M

L

Q

N

V

A

V

I

V

F

E

E

T

A

A

G

A

N

N

E

L

E

H

N

A

S

P

P

V

L

I

F

I

I

A
x
Q

G

A

T

S

P

E

G

G

T

A

F

I

T

K

H

Y

A

M

G

G

T

I

E

D

N

M

L

A

L

V

A

G

L

M

V

V

S

K

A

I

M

M

A
x
C

K
x
E

Q

R

Y

Y

H

P

H

H

-

I

P

P

L

V

A

A

I

L

H

H

L

L

D
|
D

H
|
H

H

G

T

T

K

T

F

F

D

E

D

S

I

C

A

E

Q

K

K

A

V

V

R

K

S

A

G

G

V

F

R

T

S

S

V

V

M

M

I

I

D
|
D

A

A

S
|
S

H

H

L

H

P

A

F

F

A

E

Q

E

N

N

I

L

S

E

R

L

V

T

K

S

E

K

V

V

D

K

F

M

C

A

H

H

R

N

F

A

D

G

V

V

S

S

V

V

E

E

A

A

E
|
E

L

L

G
|
G

Q

R

L

L

G

M

G

G

Q

-

E

-

D

-

V

-

Q

-

V

-

N

-

E

-

A

-

D

-

A

I

L

V

Y

L

T

V

N

N

P

P

A

K

Q

E

A

A

R

E

E

Q

F

F

A

V

E

K

A

E

T

S

G

Q

I

V

D

D

S

Y

L

L

A

A