Comparing 16258 b2149 fused methyl-galactoside transporter subunits of ABC superfamily: ATP-binding components (NCBI) to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
45% identity, 98% coverage: 11:504/506 of query aligns to 2:492/501 of P04983
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
27% identity, 43% coverage: 13:229/506 of query aligns to 4:230/254 of 1g6hA
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
27% identity, 43% coverage: 13:229/506 of query aligns to 4:230/253 of 1g9xB
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
29% identity, 43% coverage: 13:228/506 of query aligns to 1:220/343 of P30750
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
28% identity, 43% coverage: 12:228/506 of query aligns to 1:221/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
28% identity, 43% coverage: 12:228/506 of query aligns to 1:221/344 of 3tuiC
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
28% identity, 43% coverage: 12:228/506 of query aligns to 1:221/344 of 6cvlD
3c4jA Abc protein artp in complex with atp-gamma-s
27% identity, 43% coverage: 13:231/506 of query aligns to 3:219/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
27% identity, 43% coverage: 13:231/506 of query aligns to 3:219/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
27% identity, 43% coverage: 13:231/506 of query aligns to 3:219/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
27% identity, 43% coverage: 13:231/506 of query aligns to 3:219/242 of 2oljA
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
27% identity, 43% coverage: 13:228/506 of query aligns to 6:218/240 of 1ji0A
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
25% identity, 43% coverage: 13:228/506 of query aligns to 2:215/241 of 4u00A
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
25% identity, 43% coverage: 13:229/506 of query aligns to 2:216/240 of 6mjpA
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
27% identity, 43% coverage: 14:229/506 of query aligns to 3:216/235 of 6mhzA
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
27% identity, 43% coverage: 14:229/506 of query aligns to 3:216/233 of 6b8bA
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
27% identity, 43% coverage: 14:229/506 of query aligns to 3:216/234 of 6b89A
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
27% identity, 43% coverage: 14:229/506 of query aligns to 3:216/234 of 4p31A
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
27% identity, 43% coverage: 14:229/506 of query aligns to 3:216/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
27% identity, 43% coverage: 14:229/506 of query aligns to 3:216/238 of 6s8gA
>16258 b2149 fused methyl-galactoside transporter subunits of ABC superfamily: ATP-binding components (NCBI)
MVSSTTPSSGEYLLEMSGINKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLF
GIYQKDSGTILFQGKEIDFHSAKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMF
VDQDKMYRETKAIFDELDIDIDPRARVGTLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSL
TEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEVTVLRDGQWIATEPLAGLTMDK
IIAMMVGRSLNQRFPDKENKPGEVILEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGA
KRTDIVETLFGIREKSAGTITLHGKQINNHNANEAINHGFALVTEERRSTGIYAYLDIGF
NSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRW
LLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKGKGIIIISSEMPELLGITDRILVMS
NGLVSGIVDTKTTTQNEILRLASLHL
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory