Comparing 17341 b3271 predicted amino-acid transporter subunit (NCBI) to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
64% identity, 96% coverage: 12:252/252 of query aligns to 2:241/241 of 4u00A
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
60% identity, 95% coverage: 12:251/252 of query aligns to 1:240/240 of 4ymuJ
3c4jA Abc protein artp in complex with atp-gamma-s
58% identity, 95% coverage: 12:251/252 of query aligns to 3:242/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
58% identity, 95% coverage: 12:251/252 of query aligns to 3:242/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
58% identity, 95% coverage: 12:251/252 of query aligns to 3:242/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
58% identity, 95% coverage: 12:251/252 of query aligns to 3:242/242 of 2oljA
P02915 Histidine/lysine/arginine/ornithine transport ATP-binding protein HisP; EC 7.4.2.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
48% identity, 92% coverage: 17:247/252 of query aligns to 11:253/258 of P02915
1b0uA Atp-binding subunit of the histidine permease from salmonella typhimurium (see paper)
48% identity, 92% coverage: 17:248/252 of query aligns to 7:250/258 of 1b0uA
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
38% identity, 96% coverage: 12:252/252 of query aligns to 1:246/343 of P30750
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
38% identity, 96% coverage: 12:252/252 of query aligns to 2:247/344 of 6cvlD
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
38% identity, 96% coverage: 12:252/252 of query aligns to 2:247/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
38% identity, 96% coverage: 12:252/252 of query aligns to 2:247/344 of 3tuiC
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
36% identity, 97% coverage: 7:250/252 of query aligns to 10:251/378 of P69874
Sites not aligning to the query:
1f3oA Crystal structure of mj0796 atp-binding cassette (see paper)
39% identity, 85% coverage: 12:225/252 of query aligns to 1:223/232 of 1f3oA
1l2tA Dimeric structure of mj0796, a bacterial abc transporter cassette (see paper)
39% identity, 85% coverage: 12:225/252 of query aligns to 1:223/230 of 1l2tA
2d62A Crystal structure of multiple sugar binding transport atp- binding protein
34% identity, 94% coverage: 11:248/252 of query aligns to 5:244/375 of 2d62A
5xu1B Structure of a non-canonical abc transporter from streptococcus pneumoniae r6 (see paper)
39% identity, 87% coverage: 12:230/252 of query aligns to 3:225/226 of 5xu1B
1vciA Crystal structure of the atp-binding cassette of multisugar transporter from pyrococcus horikoshii ot3 complexed with atp (see paper)
35% identity, 94% coverage: 13:248/252 of query aligns to 7:230/353 of 1vciA
P0AAH0 Phosphate import ATP-binding protein PstB; ABC phosphate transporter; Phosphate-transporting ATPase; EC 7.3.2.1 from Escherichia coli (strain K12) (see paper)
32% identity, 97% coverage: 5:248/252 of query aligns to 3:253/257 of P0AAH0
Sites not aligning to the query:
8hplC Lpqy-sugabc in state 1 (see paper)
37% identity, 90% coverage: 11:238/252 of query aligns to 1:223/384 of 8hplC
>17341 b3271 predicted amino-acid transporter subunit (NCBI)
MSQILLQPANAMITLENVNKWYGQFHVLKNINLTVQPGERIVLCGPSGSGKSTTIRCINH
LEEHQQGRIVVDGIELNEDIRNIERVRQEVGMVFQHFNLFPHLTVLQNCTLAPIWVRKMP
KKEAEDLAVHYLERVRIAEHAHKFPGQISGGQQQRVAIARSLCMKPKIMLFDEPTSALDP
EMVKEVLDTMIGLAQSGMTMLCVTHEMGFARTVADRVIFMDRGEIVEQAAPDEFFAHPKS
ERTRAFLSQVIH
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory