SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 17940 FitnessBrowser__Keio:17940 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

O31645 PTS system mannose-specific EIIBCA component; EIIBCA-Man; EII-Man; EC 2.7.1.191 from Bacillus subtilis (strain 168) (see 2 papers)
29% identity, 86% coverage: 4:130/148 of query aligns to 506:633/650 of O31645

query
sites
O31645
L
 
I
T
 
S
A
 
P
S
 
E
C
 
L
I
 
I
D
 
E
L
 
P
N
 
N
I
 
L
Q
 
S
G
 
G
N
 
E
G
 
T
A
 
S
Y
 
D
S
 
D
V
 
I
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I
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D
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E
L
 
L
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I
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Q
I
 
K
A
 
L
L
 
S
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R
N
 
R
G
 
G
F
 
A
I
 
L
T
 
L
D
 
S
S
 
E
H
 
S
Q
 
G
F
 
F
L
 
K
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Q
T
 
A
L
 
I
L
 
L
L
 
N
R
 
R
E
 
E
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Q
M
 
Q
H
 
G
S
 
T
T
 
T
G
 
A
F
 
I
G
 
G
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M
G
 
N
V
 
I
A
 
A
V
 
I
P
 
P
H
 
H
G
 
G
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K
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S
A
 
E
C
 
A
V
 
V
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R
Q
 
E
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P
F
 
S
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V
L
 
A
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F
A
 
G
R
 
I
K
 
K
A
 
R
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S
A
 
G
I
 
V
D
 
D
W
 
W
K
 
N
A
 
S
S
 
L
D
 
D
G
 
G
E
 
S
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E
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A
N
 
K
C
 
L
W
 
I
I
 
F
C
 
M
L
 
I
G
 
A
V
 
V
P
 
P
-
 
K
Q
 
E
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S
G
 
G
E
 
G
E
 
N
D
 
Q
Q
 
H
V
 
L
K
 
K
I
 
I
I
 
L
G
 
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M
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L
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R
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K
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L
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M
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D
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D
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N
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Y
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R
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E
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R
L
 
L

Sites not aligning to the query:

O31644 Transcriptional regulator ManR; Mannose operon transcriptional activator; EC 2.7.1.191 from Bacillus subtilis (strain 168) (see paper)
31% identity, 46% coverage: 19:86/148 of query aligns to 527:592/648 of O31644

query
sites
O31644
Y
 
Y
S
 
K
V
 
L
L
 
I
K
 
E
Q
 
Q
L
 
L
A
 
A
T
 
T
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A
A
 
L
L
 
F
Q
 
E
N
 
K
G
 
G
F
 
Y
I
 
V
T
 
D
D
 
K
S
 
D
H
 
Y
Q
 
A
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V
L
 
-
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-
T
 
H
L
 
A
L
 
V
L
 
M
R
 
R
E
 
E
K
 
K
M
 
M
H
 
S
S
 
A
T
 
T
G
 
N
F
 
I
G
 
G
S
 
S
G
 
G
V
 
I
A
 
A
V
 
I
P
 
P
H
|
H
G
 
A
K
 
N
S
 
A
A
 
K
C
 
F
V
 
I
K
 
K
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Q
P
 
S
F
 
A
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A
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I
A
 
A
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T
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L
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K
Q
 
E
A
 
P
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L
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E
W
 
W

Sites not aligning to the query:

Query Sequence

>17940 FitnessBrowser__Keio:17940
MAALTASCIDLNIQGNGAYSVLKQLATIALQNGFITDSHQFLQTLLLREKMHSTGFGSGV
AVPHGKSACVKQPFVLFARKAQAIDWKASDGEDVNCWICLGVPQSGEEDQVKIIGTLCRK
IIHKEFIHQLQQGDTDQVLALLNQTLSS

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory