SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 17941 b3901 L-rhamnose mutarotase (NCBI) to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 5 hits to proteins with known functional sites (download)

1x8dA Crystal structure of e. Coli yiil protein containing l-rhamnose (see paper)
100% identity, 100% coverage: 1:104/104 of query aligns to 1:104/104 of 1x8dA

query
sites
1x8dA
M
 
M
I
 
I
R
 
R
K
 
K
A
 
A
F
 
F
V
 
V
M
 
M
Q
 
Q
V
 
V
N
 
N
P
 
P
D
 
D
A
 
A
H
 
H
E
 
E
E
 
E
Y
|
Y
Q
 
Q
R
 
R
R
 
R
H
|
H
N
 
N
P
 
P
I
 
I
W
 
W
P
 
P
E
 
E
L
 
L
E
 
E
A
 
A
V
 
V
L
 
L
K
 
K
S
 
S
H
 
H
G
 
G
A
 
A
H
 
H
N
 
N
Y
|
Y
A
 
A
I
 
I
Y
 
Y
L
 
L
D
 
D
K
 
K
A
 
A
R
 
R
N
 
N
L
 
L
L
 
L
F
 
F
A
 
A
M
 
M
V
 
V
E
 
E
I
 
I
E
 
E
S
 
S
E
 
E
E
 
E
R
 
R
W
 
W
N
 
N
A
 
A
V
 
V
A
 
A
S
 
S
T
 
T
D
 
D
V
 
V
C
 
C
Q
 
Q
R
 
R
W
|
W
W
|
W
K
 
K
Y
 
Y
M
 
M
T
 
T
D
 
D
V
 
V
M
 
M
P
 
P
A
 
A
N
 
N
P
 
P
D
 
D
N
 
N
S
 
S
P
 
P
V
 
V
S
 
S
S
 
S
E
 
E
L
 
L
Q
 
Q
E
 
E
V
 
V
F
 
F
Y
 
Y
L
 
L
P
 
P

P32156 L-rhamnose mutarotase; Rhamnose 1-epimerase; Type-3 mutarotase; EC 5.1.3.32 from Escherichia coli (strain K12) (see paper)
100% identity, 100% coverage: 1:104/104 of query aligns to 1:104/104 of P32156

query
sites
P32156
M
 
M
I
 
I
R
 
R
K
 
K
A
 
A
F
 
F
V
 
V
M
 
M
Q
 
Q
V
 
V
N
 
N
P
 
P
D
 
D
A
 
A
H
 
H
E
 
E
E
 
E
Y
|
Y
Q
 
Q
R
 
R
R
 
R
H
 
H
N
 
N
P
 
P
I
 
I
W
 
W
P
 
P
E
 
E
L
 
L
E
 
E
A
 
A
V
 
V
L
 
L
K
 
K
S
 
S
H
 
H
G
 
G
A
 
A
H
 
H
N
 
N
Y
 
Y
A
 
A
I
 
I
Y
 
Y
L
 
L
D
 
D
K
 
K
A
 
A
R
 
R
N
 
N
L
 
L
L
 
L
F
 
F
A
 
A
M
 
M
V
 
V
E
 
E
I
 
I
E
 
E
S
 
S
E
 
E
E
 
E
R
 
R
W
 
W
N
 
N
A
 
A
V
 
V
A
 
A
S
 
S
T
 
T
D
 
D
V
 
V
C
 
C
Q
 
Q
R
 
R
W
 
W
W
 
W
K
 
K
Y
 
Y
M
 
M
T
 
T
D
 
D
V
 
V
M
 
M
P
 
P
A
 
A
N
 
N
P
 
P
D
 
D
N
 
N
S
 
S
P
 
P
V
 
V
S
 
S
S
 
S
E
 
E
L
 
L
Q
 
Q
E
 
E
V
 
V
F
 
F
Y
 
Y
L
 
L
P
 
P

2qlxA Crystal structure of rhamnose mutarotase rhau of rhizobium leguminosarum in complex with l-rhamnose (see paper)
41% identity, 98% coverage: 3:104/104 of query aligns to 7:108/108 of 2qlxA

query
sites
2qlxA
R
 
K
K
 
H
A
 
A
F
 
F
V
 
K
M
|
M
Q
 
Q
V
 
L
N
 
N
P
 
P
D
 
G
A
 
M
H
 
E
E
 
A
E
 
E
Y
|
Y
Q
 
R
R
 
K
R
 
R
H
|
H
N
 
D
P
 
E
I
 
I
W
 
W
P
 
P
E
 
E
L
 
L
E
 
V
A
 
D
V
 
L
L
 
L
K
 
H
S
 
Q
H
 
S
G
 
G
A
 
A
H
 
S
N
 
D
Y
|
Y
A
 
S
I
 
I
Y
 
H
L
 
L
D
 
D
K
 
R
A
 
E
R
 
T
N
 
N
L
 
T
L
 
L
F
 
F
A
 
G
M
 
V
V
 
L
E
 
T
I
 
R
E
 
P
S
 
K
E
 
D
E
 
H
R
 
T
W
 
M
N
 
A
A
 
S
V
 
L
A
 
P
S
 
D
T
 
H
D
 
P
V
 
V
C
 
M
Q
 
K
R
 
K
W
|
W
W
|
W
K
 
A
Y
 
H
M
 
M
T
 
A
D
 
D
V
 
I
M
 
M
P
 
A
A
 
T
N
 
N
P
 
P
D
 
D
N
 
N
S
 
S
P
 
P
V
 
V
S
 
Q
S
 
S
E
 
D
L
 
L
Q
 
V
E
 
T
V
 
L
F
 
F
Y
 
H
L
 
M
P
 
P

2qlwB Crystal structure of rhamnose mutarotase rhau of rhizobium leguminosarum (see paper)
41% identity, 98% coverage: 3:104/104 of query aligns to 7:108/108 of 2qlwB

query
sites
2qlwB
R
 
K
K
 
H
A
 
A
F
 
F
V
 
K
M
 
M
Q
 
Q
V
 
L
N
 
N
P
 
P
D
 
G
A
 
M
H
 
E
E
 
A
E
 
E
Y
 
Y
Q
 
R
R
 
K
R
 
R
H
 
H
N
 
D
P
 
E
I
 
I
W
 
W
P
 
P
E
 
E
L
 
L
E
 
V
A
 
D
V
 
L
L
 
L
K
 
H
S
 
Q
H
 
S
G
 
G
A
 
A
H
 
S
N
 
D
Y
 
Y
A
 
S
I
 
I
Y
 
H
L
 
L
D
 
D
K
 
R
A
 
E
R
 
T
N
 
N
L
 
T
L
 
L
F
 
F
A
 
G
M
 
V
V
 
L
E
 
T
I
 
R
E
 
P
S
 
K
E
 
D
E
 
H
R
 
T
W
 
M
N
 
A
A
 
S
V
 
L
A
 
P
S
 
D
T
 
H
D
 
P
V
 
V
C
 
M
Q
 
K
R
 
K
W
 
W
W
 
W
K
 
A
Y
 
H
M
 
M
T
x
A
D
 
D
V
 
I
M
|
M
P
 
A
A
x
T
N
 
N
P
 
P
D
 
D
N
 
N
S
 
S
P
 
P
V
 
V
S
 
Q
S
 
S
E
 
D
L
 
L
Q
 
V
E
 
T
V
 
L
F
 
F
Y
 
H
L
 
M
P
 
P

7bywA Crystal structure of acidovorax avenae l-fucose mutarotase (l-fucose- bound form) (see paper)
28% identity, 97% coverage: 3:103/104 of query aligns to 2:107/108 of 7bywA

query
sites
7bywA
R
 
R
K
 
M
A
 
G
F
 
M
V
 
V
M
 
I
Q
 
G
V
 
I
N
 
K
P
 
P
D
 
E
A
 
H
H
 
I
E
 
D
E
 
E
Y
|
Y
Q
 
K
R
 
R
R
 
L
H
|
H
N
 
A
P
 
A
I
 
V
W
 
W
P
 
P
E
 
A
L
 
V
E
 
L
A
 
A
V
 
R
L
 
L
K
 
A
S
 
E
H
 
A
G
 
H
A
 
V
H
 
R
N
 
N
Y
|
Y
A
 
S
I
 
I
Y
 
F
L
 
L
D
 
R
K
 
E
A
 
P
R
 
E
N
 
N
L
 
L
L
 
L
F
 
F
A
 
G
M
 
Y
V
 
W
E
 
E
I
 
Y
E
 
H
S
 
G
E
 
T
E
 
D
-
 
Y
-
 
A
-
 
A
R
 
D
W
 
M
N
 
E
A
 
A
V
 
I
A
 
A
S
 
Q
T
 
D
D
 
P
V
 
E
C
 
T
Q
 
R
R
 
R
W
|
W
W
|
W
K
 
T
Y
 
F
M
 
-
T
 
-
D
 
-
V
 
-
M
 
-
P
 
-
A
 
C
N
 
G
P
 
P
D
 
C
N
 
Q
S
 
E
P
 
P
V
 
L
S
 
A
S
 
S
E
 
R
-
 
Q
-
 
P
-
 
G
-
 
E
-
 
H
-
 
W
-
 
A
-
 
H
L
 
M
Q
 
E
E
 
E
V
 
V
F
 
F
Y
 
H
L
 
V

Query Sequence

>17941 b3901 L-rhamnose mutarotase (NCBI)
MIRKAFVMQVNPDAHEEYQRRHNPIWPELEAVLKSHGAHNYAIYLDKARNLLFAMVEIES
EERWNAVASTDVCQRWWKYMTDVMPANPDNSPVSSELQEVFYLP

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory