SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 17992 FitnessBrowser__Keio:17992 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

O31645 PTS system mannose-specific EIIBCA component; EIIBCA-Man; EII-Man; EC 2.7.1.191 from Bacillus subtilis (strain 168) (see 2 papers)
39% identity, 81% coverage: 4:95/113 of query aligns to 3:93/650 of O31645

query
sites
O31645
L
 
L
V
 
L
A
 
A
V
 
I
T
 
T
A
 
S
C
|
C
V
 
P
S
 
N
G
 
G
V
 
I
A
 
A
H
 
H
T
 
T
Y
 
Y
M
 
M
A
 
A
A
 
A
E
 
E
R
 
N
L
 
L
E
 
Q
K
 
K
L
 
A
C
 
A
L
 
-
L
 
-
E
 
D
K
 
R
W
 
L
G
 
G
V
 
V
S
 
S
I
 
I
-
 
K
-
 
V
E
 
E
T
 
T
Q
 
Q
G
 
G
A
 
G
L
 
I
G
 
G
T
 
V
E
 
E
N
 
N
R
 
K
L
 
L
A
 
T
D
 
E
E
 
E
D
 
E
I
 
I
R
 
R
R
 
E
A
 
A
D
 
D
V
 
A
A
 
I
L
 
I
L
 
I
I
 
A
T
 
A
D
 
D
I
 
R
E
 
S
L
 
V
A
 
-
G
 
N
A
 
K
E
 
D
R
 
R
F
 
F
E
 
I
H
 
G
C
 
K
R
 
K
Y
 
L
V
 
L
Q
 
S
C
 
V
S
 
G
I
 
V
Y
 
Q
A
 
D
F
 
G
L
 
I
R
 
R
E
 
K
P
 
P
Q
 
E
R
 
E
V
 
L
M
 
I

Sites not aligning to the query:

P20966 PTS system fructose-specific EIIB'BC component; EIIB'BC-Fru; EC 2.7.1.202 from Escherichia coli (strain K12) (see paper)
45% identity, 58% coverage: 4:68/113 of query aligns to 106:170/563 of P20966

query
sites
P20966
L
 
V
V
 
V
A
 
A
V
 
V
T
 
T
A
 
A
C
|
C
V
 
P
S
 
T
G
 
G
V
 
V
A
 
A
H
 
H
T
 
T
Y
 
F
M
 
M
A
 
A
A
 
A
E
 
E
R
 
A
L
 
I
E
 
E
K
 
T
L
 
E
C
 
A
L
 
K
L
 
K
E
 
R
K
 
G
W
 
W
G
 
W
V
 
V
S
 
K
I
 
V
E
 
E
T
 
T
Q
 
R
G
 
G
A
 
S
L
 
V
G
 
G
T
 
A
E
 
G
N
 
N
R
 
A
L
 
I
A
 
T
D
 
P
E
 
E
D
 
E
I
 
V
R
 
A
R
 
A
A
 
A
D
 
D
V
 
L
A
 
V
L
 
I
L
 
V
I
 
A
T
 
A
D
 
D
I
 
I
E
 
E
L
 
V

Query Sequence

>17992 FitnessBrowser__Keio:17992
MAYLVAVTACVSGVAHTYMAAERLEKLCLLEKWGVSIETQGALGTENRLADEDIRRADVA
LLITDIELAGAERFEHCRYVQCSIYAFLREPQRVMSAVRKVLSAPQQTHLILE

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory