SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 18293 FitnessBrowser__Keio:18293 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 3 hits to proteins with known functional sites (download)

1ko8A Crystal structure of gluconate kinase (see paper)
47% identity, 86% coverage: 6:166/187 of query aligns to 9:169/172 of 1ko8A

query
sites
1ko8A
F
 
Y
I
 
V
L
 
L
M
 
M
G
 
G
V
 
V
S
|
S
G
 
G
S
 
S
G
 
G
K
 
K
T
 
S
L
 
A
I
 
V
G
 
A
S
 
S
K
 
E
V
 
V
A
 
A
A
 
H
L
 
Q
L
 
L
S
 
H
A
 
A
K
 
A
F
 
F
I
 
L
D
 
D
G
 
G
D
 
D
D
 
F
L
 
L
H
 
H
P
 
P
A
 
R
K
 
R
N
 
N
I
 
I
D
 
E
K
 
K
M
 
M
S
 
A
Q
 
S
G
 
G
I
 
E
P
 
P
L
 
L
S
 
N
D
 
D
E
 
D
D
 
D
R
 
R
L
 
K
P
 
P
W
 
W
L
 
L
E
 
Q
R
 
A
L
 
L
N
 
N
D
 
D
A
 
A
S
 
A
Y
 
F
S
 
A
L
 
M
Y
 
Q
K
 
R
K
 
T
N
 
N
E
 
K
T
 
V
G
 
S
F
 
L
I
 
I
V
 
V
C
 
C
S
 
S
S
 
A
L
 
L
K
 
K
K
 
K
Q
 
H
Y
 
Y
R
 
R
D
 
D
I
 
L
L
 
L
R
 
R
K
 
E
G
 
G
S
 
N
P
 
P
H
 
N
V
 
L
H
 
S
F
 
F
L
 
I
W
 
Y
L
 
L
D
 
K
G
 
G
D
 
D
Y
 
F
E
 
D
T
 
V
I
 
I
L
 
E
A
 
S
R
 
R
M
x
L
Q
 
K
R
 
A
R
 
R
A
 
K
G
 
G
H
 
H
F
 
F
M
 
F
P
 
K
V
 
T
A
 
Q
L
 
M
L
 
L
K
 
V
S
 
T
Q
 
Q
F
 
F
E
 
E
A
 
T
L
 
L
E
 
Q
R
 
E
P
 
P
Q
 
G
A
 
A
D
 
D
E
 
E
Q
 
T
D
 
D
I
 
V
V
 
L
R
 
V
I
 
V
D
 
D
I
 
I
N
 
D
H
 
Q
D
 
P
I
 
L
A
 
E
N
 
G
V
 
V
T
 
V
E
 
A
Q
 
S
C
 
T
R
 
I
Q
 
E
A
 
V
V
 
I

1ko5A Crystal structure of gluconate kinase (see paper)
47% identity, 86% coverage: 6:166/187 of query aligns to 9:169/172 of 1ko5A

query
sites
1ko5A
F
 
Y
I
 
V
L
 
L
M
 
M
G
 
G
V
 
V
S
|
S
G
|
G
S
 
S
G
|
G
K
|
K
T
x
S
L
 
A
I
 
V
G
 
A
S
 
S
K
 
E
V
 
V
A
 
A
A
 
H
L
 
Q
L
 
L
S
 
H
A
 
A
K
 
A
F
 
F
I
 
L
D
 
D
G
 
G
D
 
D
D
 
F
L
 
L
H
 
H
P
 
P
A
 
R
K
 
R
N
 
N
I
 
I
D
 
E
K
 
K
M
 
M
S
 
A
Q
 
S
G
 
G
I
 
E
P
 
P
L
 
L
S
 
N
D
 
D
E
 
D
D
 
D
R
 
R
L
 
K
P
 
P
W
 
W
L
 
L
E
 
Q
R
 
A
L
 
L
N
 
N
D
 
D
A
 
A
S
 
A
Y
 
F
S
 
A
L
 
M
Y
 
Q
K
 
R
K
 
T
N
 
N
E
 
K
T
 
V
G
 
S
F
 
L
I
 
I
V
 
V
C
 
C
S
 
S
S
 
A
L
 
L
K
 
K
K
 
K
Q
 
H
Y
 
Y
R
 
R
D
 
D
I
 
L
L
 
L
R
 
R
K
 
E
G
 
G
S
 
N
P
 
P
H
 
N
V
 
L
H
 
S
F
 
F
L
 
I
W
 
Y
L
 
L
D
 
K
G
 
G
D
 
D
Y
 
F
E
 
D
T
 
V
I
 
I
L
 
E
A
 
S
R
|
R
M
 
L
Q
 
K
R
 
A
R
|
R
A
 
K
G
 
G
H
 
H
F
 
F
M
 
F
P
 
K
V
 
T
A
 
Q
L
 
M
L
 
L
K
 
V
S
 
T
Q
 
Q
F
 
F
E
 
E
A
 
T
L
 
L
E
 
Q
R
 
E
P
 
P
Q
 
G
A
 
A
D
 
D
E
 
E
Q
 
T
D
 
D
I
 
V
V
 
L
R
 
V
I
 
V
D
 
D
I
 
I
N
 
D
H
 
Q
D
 
P
I
x
L
A
 
E
N
 
G
V
 
V
T
 
V
E
 
A
Q
 
S
C
 
T
R
 
I
Q
 
E
A
 
V
V
 
I

1kofA Crystal structure of gluconate kinase (see paper)
47% identity, 86% coverage: 6:166/187 of query aligns to 9:169/171 of 1kofA

query
sites
1kofA
F
 
Y
I
 
V
L
 
L
M
 
M
G
 
G
V
 
V
S
|
S
G
|
G
S
 
S
G
|
G
K
|
K
T
x
S
L
x
A
I
 
V
G
 
A
S
 
S
K
 
E
V
 
V
A
 
A
A
 
H
L
 
Q
L
 
L
S
 
H
A
 
A
K
 
A
F
 
F
I
 
L
D
 
D
G
 
G
D
 
D
D
 
F
L
 
L
H
 
H
P
 
P
A
 
R
K
 
R
N
 
N
I
 
I
D
 
E
K
 
K
M
 
M
S
 
A
Q
 
S
G
 
G
I
 
E
P
 
P
L
 
L
S
 
N
D
 
D
E
 
D
D
 
D
R
 
R
L
 
K
P
 
P
W
 
W
L
 
L
E
 
Q
R
 
A
L
 
L
N
 
N
D
 
D
A
 
A
S
 
A
Y
 
F
S
 
A
L
 
M
Y
 
Q
K
 
R
K
 
T
N
 
N
E
 
K
T
 
V
G
 
S
F
 
L
I
 
I
V
 
V
C
 
C
S
 
S
S
 
A
L
 
L
K
 
K
K
 
K
Q
 
H
Y
 
Y
R
 
R
D
 
D
I
 
L
L
 
L
R
 
R
K
 
E
G
 
G
S
 
N
P
 
P
H
 
N
V
 
L
H
 
S
F
 
F
L
 
I
W
 
Y
L
 
L
D
 
K
G
 
G
D
 
D
Y
 
F
E
 
D
T
 
V
I
 
I
L
 
E
A
 
S
R
|
R
M
 
L
Q
 
K
R
 
A
R
 
R
A
 
K
G
 
G
H
 
H
F
 
F
M
 
F
P
 
K
V
 
T
A
 
Q
L
 
M
L
 
L
K
 
V
S
 
T
Q
 
Q
F
 
F
E
 
E
A
 
T
L
 
L
E
 
Q
R
 
E
P
 
P
Q
 
G
A
 
A
D
 
D
E
 
E
Q
 
T
D
 
D
I
 
V
V
 
L
R
 
V
I
 
V
D
 
D
I
 
I
N
 
D
H
 
Q
D
 
P
I
x
L
A
 
E
N
 
G
V
 
V
T
 
V
E
 
A
Q
 
S
C
 
T
R
 
I
Q
 
E
A
 
V
V
 
I

Query Sequence

>18293 FitnessBrowser__Keio:18293
MAGESFILMGVSGSGKTLIGSKVAALLSAKFIDGDDLHPAKNIDKMSQGIPLSDEDRLPW
LERLNDASYSLYKKNETGFIVCSSLKKQYRDILRKGSPHVHFLWLDGDYETILARMQRRA
GHFMPVALLKSQFEALERPQADEQDIVRIDINHDIANVTEQCRQAVLAIRQNRICAKEGS
ASDQRCE

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory