SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 1937924_811_999 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
36% identity, 99% coverage: 1:188/189 of query aligns to 46:237/240 of 4qhzC

query
sites
4qhzC
A
 
V
L
 
L
F
 
F
D
 
D
G
 
G
T
 
K
A
 
D
A
 
L
S
 
S
Q
 
A
E
 
-
Q
 
-
W
 
W
Q
 
E
H
 
S
T
 
V
D
 
K
G
 
G
R
 
G
K
 
A
A
 
A
A
 
E
W
 
W
P
 
D
L
 
V
A
 
H
E
 
D
E
 
G
R
 
V
-
 
F
S
 
T
M
 
V
E
 
N
V
 
K
C
 
K
C
 
K
G
 
G
D
 
D
I
 
I
R
 
Q
T
 
T
K
 
K
D
 
Q
A
 
K
Y
 
F
Q
 
N
D
 
D
F
 
F
K
 
Q
L
 
M
H
 
H
V
 
I
E
 
E
F
 
W
R
 
Q
V
 
V
P
 
P
L
 
-
L
 
-
P
 
-
D
 
T
D
 
N
V
 
I
T
 
T
G
 
G
-
 
E
-
 
S
Q
 
Q
D
 
S
R
 
R
G
 
G
N
|
N
S
|
S
G
 
G
I
 
I
Y
 
F
L
 
L
Q
 
Q
D
 
G
R
 
M
Y
 
Y
E
|
E
L
 
V
Q
|
Q
I
 
V
L
 
L
D
 
D
S
 
C
Y
 
Y
G
 
N
D
 
N
T
 
P
T
 
T
L
 
Y
D
 
V
T
 
N
N
 
G
E
 
Q
A
 
T
G
 
G
A
 
S
I
 
I
Y
 
Y
L
 
K
K
 
Q
K
 
S
A
 
I
P
 
P
D
 
L
T
 
A
N
 
N
A
 
A
A
 
M
T
 
R
A
 
K
P
 
P
E
 
G
T
 
E
W
 
W
Q
 
N
T
 
V
Y
 
Y
D
 
D
I
 
I
V
 
I
F
 
Y
R
 
T
A
 
A
A
 
P
R
 
T
F
 
F
D
 
K
E
 
E
N
 
D
G
 
G
A
 
S
K
 
Y
T
 
R
A
 
T
D
 
H
A
 
P
R
 
T
V
 
V
T
 
T
V
 
V
V
 
I
W
 
Q
N
 
N
G
 
G
E
 
V
T
 
V
V
 
L
H
 
Q
D
 
N
D
 
H
V
 
T
A
 
T
L
 
I
D
 
L
G
 
G
P
 
T
T
 
T
-
 
E
-
 
W
-
 
I
A
 
G
A
 
F
G
 
P
R
 
Q
A
 
V
E
 
K
T
 
K
P
 
H
A
 
G
A
 
A
G
 
G
A
 
P
I
 
I
R
 
I
L
 
L
Q
|
Q
D
 
S
H
 
H
G
 
G
N
 
D
-
 
P
-
 
S
-
 
E
K
 
P
V
 
I
R
 
S
F
 
F
R
 
R
D
 
N
I
 
I
R
 
W
V
 
I

Query Sequence

>1937924_811_999
ALFDGTAASQEQWQHTDGRKAAWPLAEERSMEVCCGDIRTKDAYQDFKLHVEFRVPLLPD
DVTGQDRGNSGIYLQDRYELQILDSYGDTTLDTNEAGAIYLKKAPDTNAATAPETWQTYD
IVFRAARFDENGAKTADARVTVVWNGETVHDDVALDGPTAAGRAETPAAGAIRLQDHGNK
VRFRDIRVE

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory