Comparing 200073 FitnessBrowser__MR1:200073 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 6 hits to proteins with known functional sites (download)
3h7cX Crystal structure of arabidopsis thaliana agmatine deiminase from cell free expression
53% identity, 96% coverage: 14:368/370 of query aligns to 7:366/369 of 3h7cX
Q8GWW7 Agmatine deiminase; Agmatine iminohydrolase; Protein EMBRYO DEFECTIVE 1873; EC 3.5.3.12 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
52% identity, 96% coverage: 14:368/370 of query aligns to 7:373/383 of Q8GWW7
G7JT50 Agmatine deiminase; Agmatine iminohydrolase; MtAIH; EC 3.5.3.12 from Medicago truncatula (Barrel medic) (Medicago tribuloides) (see paper)
49% identity, 97% coverage: 11:368/370 of query aligns to 4:373/374 of G7JT50
6nicD Crystal structure of medicago truncatula agmatine iminohydrolase (deiminase) in complex with 6-aminohexanamide (see paper)
50% identity, 95% coverage: 19:368/370 of query aligns to 2:359/360 of 6nicD
Q837U5 Putative agmatine deiminase; Agmatine iminohydrolase; EC 3.5.3.12 from Enterococcus faecalis (strain ATCC 700802 / V583) (see paper)
46% identity, 96% coverage: 13:367/370 of query aligns to 8:363/365 of Q837U5
6b2wA C. Jejuni c315s agmatine deiminase with substrate bound (see paper)
30% identity, 93% coverage: 25:369/370 of query aligns to 15:331/333 of 6b2wA
>200073 FitnessBrowser__MR1:200073
MTNVNVDVTPLTTKPSQDGFYMPAEWAAQQAVWMIWPYRPDNWRAAGAYAQATFAKVVDA
IGAATPVYMGVPKAFLAKAKTVMPSHVTLVEMDSNDCWARDTGPTVVVNAEGECRGVDWG
FNAWGGHNGGLYFPWDKDEQVAQQMLAQHGFARYRAPLILEGGSIHVDGEGTCMTSAECL
LNANRNPELTKEQIEGLLRDYLNVKQFIWLQDGVYMDETDGHIDNMCCFARPGEVILHWT
DDESDPQYPRSKAALEVLQNTVDAQGRKLKIHLLPQPGPLYCSEEESKGVTEGTGVPRTA
GERLAGSYVNFLITNHRIVFPLLDPATDDIAAQKLQEIFPEHEIVGVPAREILLGGGNIH
CITQQIPAGK
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory