Comparing 200256 FitnessBrowser__MR1:200256 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 1 hits to proteins with known functional sites (download)
Q02DS7 Tryptophan-specific transport protein; Tryptophan permease from Pseudomonas aeruginosa (strain UCBPP-PA14) (see paper)
31% identity, 95% coverage: 2:376/395 of query aligns to 12:391/417 of Q02DS7
Sites not aligning to the query:
>200256 FitnessBrowser__MR1:200256
MNSKMLGSIAIVAGTAIGAGMLALPLATAALGMVPAILLMVVIWGLSAYTSLLMLEINLR
SGVGDNVHAITGKLLGKKGQIVQGASFLSLLVALTAAYLTGGSSLLVLKAQNMFDIVLDN
QLAVVLFTIVLGGFAALGVAWVDKVSRFLFSLMILLLIVVVLFLLPEVSISTIATSAVAQ
SLTSSWMAAIPVVFTSFGFHVCIATLVRYLDGDTVSLRKVLLIGSTIPLACYIFWLLVTL
GTVGGNEINGFNGSLPALISALQEIAHTPLISKCISLFADLALITSFLGVTLSLYDFVAE
LTRAKKTFVGRAQTWLLTFVPPLLCALYVPEGFVAVLGFAAVPLVVMIIFLPIAMALRQR
QIQPQGYQVVGGTFALGLAGILGAIIIGAQLFVAL
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory