Comparing 201398 FitnessBrowser__MR1:201398 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
4rqoB Crystal structure of l-serine dehydratase from legionella pneumophila (see paper)
52% identity, 100% coverage: 2:458/458 of query aligns to 3:448/448 of 4rqoB
2iafA Crystal structure of a fragment (residues 11 to 161) of l-serine dehydratase from legionella pneumophila
35% identity, 31% coverage: 16:159/458 of query aligns to 1:140/140 of 2iafA
>201398 FitnessBrowser__MR1:201398
MISVFDMFKIGIGPSSSHTVGPMKAGKIFMQHLADSGQIGQIDELRAELFGSLGQTGKGH
GTGKAVILGLMGEDPETVDTDSIDGILEHVSKSETLTISCGKVVKFTREDGITYHRRKSL
PAHANAMTLYAYSKGECIFERTYYSVGGGFILDEDEINQRNASPASQIESAPYDFNSSAQ
LLELCTEHGLSISSLMMANELSLASEEEVKAKLWNIWQTMKTCIERGYQKEGILPGGLKL
RRRAPALYRRLKAEGRNNVDPLTAMDWVDLFALSVNEQNAAGDRVVTAPTNGAAGIIPAV
LCYYDTFVQEVDIDVCARYLLTAAAIGILYKKNASISGAEVGCQGEVGVACSMAAGALTE
IMGGTVEHVENAAEIGMEHNLGLTCDPVGGLVQVPCIERNAMGAIKAINASRMALRGDGN
HKVSLDKVIKTMMDTGKDMRSKYKETAKGGLAVNIVEC
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory