Comparing 201733 FitnessBrowser__MR1:201733 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 1 hits to proteins with known functional sites (download)
Q54VI3 Glutamate dehydrogenase 2; NAD-specific glutamate dehydrogenase; NAD-GDH; EC 1.4.1.2 from Dictyostelium discoideum (Social amoeba) (see paper)
23% identity, 31% coverage: 684:1181/1614 of query aligns to 422:895/1042 of Q54VI3
>201733 FitnessBrowser__MR1:201733
MALKDAMPSVLLENVVSLIHAKVPNSQAKQVEQFATCLYAHMSKDDLNARNDSDLYGAVL
SLWNALNKTPKGETHLRVFNPSQSKHGWQSTHSIIEVIQPDMPFLVDSVGMALNRMGITA
HVMLHTPLAIERSAQEVTKVTYLNQSPDSTEHVAVFLIEIDRQSSTADIKALEREIQSVL
ADVAASVNDWGAMSAKLSETIKELPKRPFPGEKQELEEAINFLTYLNNHHFTLLGYRQYD
LKRVEGDVELVPNIASSLGLMNKHHKTQPEQGLLLSSFSDSARKEALDHSLLILTKSSAK
SRVHRPAYVDYIGIKRFDKKGNVIGEDRFIGLYASNVYNRSPREIPLLNEKVQRVLDRSG
LTPRSHDYKALLNILENLPRDELIQANVDDLAHTAHGVLEMQDRDKLKLFVRKDGFGRFL
SCLVYVSKDRYNTKLRQDTQRILAQHFNSKEDVEFTTYFSESTLARTHYIVKVDNNNMDV
DVAAIENNLIEAARSWEDKLNTALNNALGEEAGTHLMKRYANAFEQSYKEDVLPSSAVVD
MQQLEALDDEHKLGMLFYQPQEAALNDNKVRLKLFHKDEPIHLSDVLPMLENFGLRVINE
RPYEVTTADGSTFWILDFLMTVKVVNTDNIADSQDRFQTALSQVWQKKLEDDGFNRIILA
SGLTGREVSVLRAYAKYMRQIDATFSQAYIEETFGRYPQIADLLVKMFIRKFNPKLKTRT
LGKFMEQINLRLDEVSSLDDDRIIRRYLDLINATLRTNFYQLDAKGESKSYISFKFMPSL
IPEMPRPLPKFEIFVYSPRVEGVHLRYGKVARGGLRWSDRREDFRTEVLGLVKAQQVKNT
VIVPVGAKGGFVCKQLPTEGGREAFFTEGQECYRIFIRALLDITDNILNGEIVHPVDVVR
HDEDDPYLVVAADKGTATFSDIANSISLEYNFWLGDAFASGGSNGYDHKKMGITAKGGWE
SVKRHFREVGIDCQTTDFTCLGIGDMAGDVFGNGMLLSKHTKLVAAFNHMHIFIDPNPDA
ATSYEERARLFALPRSSWEDYNSKLISKGGGVFLRSSKSIPLSAEMKQMLGTEKISMTPT
EMMKELLKMPVDLIWNGGIGTYVKSSRETNAEVGDRANDALRVNGRELRAKIVGEGGNLG
CTQLGRIEYAANGGRINTDFVDNVGGVDCSDNEVNIKILLNAMVTEGELTLKQRNRLLGE
MTEEVGEIVLQDCKDQTRTISVTQVRGAEQLKEQIRFIQYLEKEGKLDRALEFLPSEEEL
TERLANGRALTRPELSVLVAYAKMVLKEQLLTPEITEDTLLSQLLIAYFPKKLQELYSAR
MVTHPLRGEIIATSLANELVNDMGLNFVQRMQDETGASVADAAICYTMAREVFGLAELTK
SITDLNGIVPAVVQGEMLHQLRRNMRRACRWFLRHRNRSWSIEQTVAFFKPVFEQLKANV
HSYLAEEEAAGIQAEINALIKENVPQDVASTVANMSTLFSTLDIAQIAQAEEKTVALVAE
TYFKLGARVELHWFLEQISAQPVTNHWQALARAAFREELDWQQRALTSVVLRTCSATCNA
QSVISLWIETNQALLERWFHMLADFKTSQNHEFAKFSVALRELNLLILHCEGQK
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory