Comparing 202051 FitnessBrowser__MR1:202051 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
5xu1B Structure of a non-canonical abc transporter from streptococcus pneumoniae r6 (see paper)
47% identity, 85% coverage: 11:224/253 of query aligns to 4:218/226 of 5xu1B
P75957 Lipoprotein-releasing system ATP-binding protein LolD; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
52% identity, 81% coverage: 23:226/253 of query aligns to 16:223/233 of P75957
7mdyC Lolcde nucleotide-bound
51% identity, 81% coverage: 23:226/253 of query aligns to 13:220/226 of 7mdyC
Sites not aligning to the query:
7arlD Lolcde in complex with lipoprotein and adp (see paper)
51% identity, 81% coverage: 23:226/253 of query aligns to 13:220/222 of 7arlD
2pclA Crystal structure of abc transporter with complex (aq_297) from aquifex aeolicus vf5
48% identity, 84% coverage: 15:226/253 of query aligns to 8:216/223 of 2pclA
7v8iD Lolcd(e171q)e with bound amppnp in nanodiscs (see paper)
50% identity, 81% coverage: 23:226/253 of query aligns to 15:222/229 of 7v8iD
1f3oA Crystal structure of mj0796 atp-binding cassette (see paper)
42% identity, 87% coverage: 11:230/253 of query aligns to 2:227/232 of 1f3oA
5ws4A Crystal structure of tripartite-type abc transporter macb from acinetobacter baumannii (see paper)
45% identity, 90% coverage: 7:233/253 of query aligns to 1:227/650 of 5ws4A
1l2tA Dimeric structure of mj0796, a bacterial abc transporter cassette (see paper)
41% identity, 87% coverage: 11:230/253 of query aligns to 2:227/230 of 1l2tA
P75831 Macrolide export ATP-binding/permease protein MacB; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
41% identity, 88% coverage: 15:236/253 of query aligns to 9:229/648 of P75831
5lilA Structure of aggregatibacter actinomycetemcomitans macb bound to atpys (p21) (see paper)
40% identity, 90% coverage: 11:237/253 of query aligns to 4:231/615 of 5lilA
5lj7A Structure of aggregatibacter actinomycetemcomitans macb bound to atp (p21) (see paper)
40% identity, 90% coverage: 11:237/253 of query aligns to 4:231/592 of 5lj7A
8g4cB Bceabs atpgs high res tm (see paper)
39% identity, 83% coverage: 16:226/253 of query aligns to 9:221/248 of 8g4cB
7tchB Bceab e169q variant atp-bound conformation (see paper)
38% identity, 83% coverage: 16:226/253 of query aligns to 8:220/245 of 7tchB
P0A9R7 Cell division ATP-binding protein FtsE from Escherichia coli (strain K12) (see paper)
38% identity, 85% coverage: 13:227/253 of query aligns to 1:216/222 of P0A9R7
8w6iD Cryo-em structure of escherichia coli str k12 ftsex complex with atp- gamma-s in peptidisc
38% identity, 85% coverage: 13:227/253 of query aligns to 1:216/219 of 8w6iD
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
39% identity, 86% coverage: 25:242/253 of query aligns to 12:230/240 of 4ymuJ
Sites not aligning to the query:
8hd0A Cell divisome spg hydrolysis machinery ftsex-envc
37% identity, 85% coverage: 13:227/253 of query aligns to 1:216/218 of 8hd0A
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
39% identity, 92% coverage: 11:244/253 of query aligns to 3:232/241 of 4u00A
P9WQK5 Uncharacterized ABC transporter ATP-binding protein Rv0073 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
36% identity, 89% coverage: 11:236/253 of query aligns to 4:230/330 of P9WQK5
>202051 FitnessBrowser__MR1:202051
MSNVVSKNSAINVVNLEKSVTTQEGSLTILKGINLDVKQGESVAILGPSGSGKSTLLGLL
AALDTPTAGEIWLDGEALSPLNEEQKAALRKQKVSFIFQSFMLVDTLTALENVMLPAELA
GVKNAKEKAEAMLGRVGLSHRLTHLPKQLSGGEQQRVAIARAFICEPKVLFADEPTGNLD
SVNGHKIADMLFELNQENHTTLILVTHDLQLAKRCQRQLVMDNGHLQENEHPNALQSNSA
CESNSITASAKEA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory