Comparing 202248 FitnessBrowser__MR1:202248 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
A3QCW5 C4-dicarboxylate-binding periplasmic protein DctP from Shewanella loihica (strain ATCC BAA-1088 / PV-4) (see paper)
77% identity, 96% coverage: 13:339/339 of query aligns to 10:336/336 of A3QCW5
7bcrA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t in complex with galactonate (see paper)
30% identity, 90% coverage: 36:339/339 of query aligns to 4:307/310 of 7bcrA
7bcpA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t in complex with gluconate (see paper)
30% identity, 90% coverage: 36:339/339 of query aligns to 4:307/310 of 7bcpA
7bcoA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t in complex with d-foconate (see paper)
30% identity, 90% coverage: 36:339/339 of query aligns to 4:307/310 of 7bcoA
7bcnA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t in complex with xylonic acid (see paper)
30% identity, 90% coverage: 36:339/339 of query aligns to 4:307/310 of 7bcnA
7bbrA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t (see paper)
30% identity, 90% coverage: 36:339/339 of query aligns to 5:308/310 of 7bbrA
4p9kA Crystal structure of a trap periplasmic solute binding protein from verminephrobacter eiseniae ef01-2 (veis_3954, target efi-510324) a nephridial symbiont of the earthworm eisenia foetida, bound to d- erythronate with residual density suggestive of superposition with copurified alternative ligand. (see paper)
29% identity, 88% coverage: 34:332/339 of query aligns to 1:297/303 of 4p9kA
4pakA Crystal structure of a trap periplasmic solute binding protein from verminephrobacter eiseniae ef01-2 (veis_3954, target efi-510324) a nephridial symbiont of the earthworm eisenia foetida, bound to (r)- pantoic acid (see paper)
29% identity, 88% coverage: 34:332/339 of query aligns to 2:298/304 of 4pakA
P44542 Sialic acid-binding periplasmic protein SiaP; Extracytoplasmic solute receptor protein SiaP; N-acetylneuraminic-binding protein; Neu5Ac-binding protein from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (see 2 papers)
30% identity, 93% coverage: 13:328/339 of query aligns to 2:315/329 of P44542
Q0B2F6 Solute-binding protein Bamb_6123 from Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) (Burkholderia cepacia (strain AMMD)) (see paper)
26% identity, 89% coverage: 21:323/339 of query aligns to 11:312/328 of Q0B2F6
4n17A Crystal structure of a trap periplasmic solute binding protein from burkholderia ambifaria (bam_6123), target efi-510059, with bound beta-d-galacturonate (see paper)
27% identity, 80% coverage: 54:323/339 of query aligns to 17:286/301 of 4n17A
Sites not aligning to the query:
4n15A Crystal structure of a trap periplasmic solute binding protein from burkholderia ambifaria (bam_6123), target efi-510059, with bound beta-d-glucuronate (see paper)
27% identity, 80% coverage: 54:323/339 of query aligns to 17:286/301 of 4n15A
Sites not aligning to the query:
4n8yA Crystal structure of a trap periplasmic solute binding protein from bradyrhizobium sp. Btai1 b (bbta_0128), target efi-510056 (bbta_0128), complex with alpha/beta-d-galacturonate (see paper)
29% identity, 75% coverage: 68:322/339 of query aligns to 32:284/300 of 4n8yA
Sites not aligning to the query:
4pdhA Crystal structure of a trap periplasmic solute binding protein from polaromonas sp js666 (bpro_1871, target efi-510164) bound to d- erythronate (see paper)
29% identity, 87% coverage: 39:332/339 of query aligns to 4:295/301 of 4pdhA
4pddA Crystal structure of a trap periplasmic solute binding protein from polaromonas sp js666 (bpro_0088, target efi-510167) bound to d- erythronate (see paper)
28% identity, 89% coverage: 39:339/339 of query aligns to 4:301/303 of 4pddA
3b50A Structure of h. Influenzae sialic acid binding protein bound to neu5ac. (see paper)
30% identity, 87% coverage: 35:328/339 of query aligns to 1:292/310 of 3b50A
2v4cA Structure of sialic acid binding protein (siap) in the presence of kdn (see paper)
30% identity, 87% coverage: 35:328/339 of query aligns to 1:292/309 of 2v4cA
2cexA Structure of a sialic acid binding protein (siap) in the presence of the sialic acid acid analogue neu5ac2en (see paper)
30% identity, 86% coverage: 38:328/339 of query aligns to 3:291/304 of 2cexA
Sites not aligning to the query:
2cexB Structure of a sialic acid binding protein (siap) in the presence of the sialic acid acid analogue neu5ac2en (see paper)
30% identity, 86% coverage: 38:328/339 of query aligns to 3:291/305 of 2cexB
Sites not aligning to the query:
2wx9A Crystal structure of the sialic acid binding periplasmic protein siap (see paper)
30% identity, 87% coverage: 35:328/339 of query aligns to 1:292/308 of 2wx9A
>202248 FitnessBrowser__MR1:202248
MTLNQQMGITRPLKTVAKMLALASVFATSFNVFAAPVEIKFSHVVAENTPKGQMALKFKE
LVEQRLPGEYTVSVFPNSQLFGDNNELAALLLNDVQFVAPSLSKFERYTKRLQVFDLPFL
FNDMDAVNRFQQGEAGQALLNSMSRKGIVGLGYLHNGMKQFTANTPLKQPSDAKGLKFRV
MASDVLAAQFDAVGAIPVKKPFSEVFTLLQTRAIDGQENTWSNTYSQKFYEVQSHITESN
HGVLDYMVVTSDAFWKSLPADKRKVIKEALDESIALGNKIAAEKDNEDKQLILDSKLSQL
VTLSPAERQQWVDVMKPVWSKFEDQVGKDVIEAAVAANK
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory