Comparing 206676 MicrobesOnline__882:206676 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 2 hits to proteins with known functional sites (download)
4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
41% identity, 80% coverage: 45:250/256 of query aligns to 5:214/214 of 4ymwC
4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
41% identity, 80% coverage: 45:250/256 of query aligns to 5:214/215 of 4ymtC
>206676 MicrobesOnline__882:206676
MRIEITDGASIPDPKERRLITAWSLSFLAAIGTLIYLCASQPDPYWRLLQFLPDGILVTF
QVTVFSIICSIPIGLITGLGRLSRNRGINLVASTYVEVVRGIPLLVQLFYIYYALGRFLK
VPDMLAAIIALSVCYGAYMGEVFRAGIEAIPKGQTEAARSLGFNRVETMFLVVLPQAWRT
ILPPVGNEFIAMLKDTSLVSIIAVADILRRGREFASESFQYFETYTMIALVYLLITLLLS
KGVSIMEARLNYYDRR
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory