Comparing 207689 MicrobesOnline__882:207689 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 1 hits to proteins with known functional sites (download)
Q02DS7 Tryptophan-specific transport protein; Tryptophan permease from Pseudomonas aeruginosa (strain UCBPP-PA14) (see paper)
57% identity, 97% coverage: 10:423/425 of query aligns to 3:416/417 of Q02DS7
>207689 MicrobesOnline__882:207689
MSQCMTANGQTATQAGVKNPSVLGGAMIIAGTTIGAGMFSLPSVSAGMWFFYSLFVLFGT
WLCMCHSGLMILEANLNYPAGTSFDNIAKDCLARPVRLLNSLSVAFVLYILTYAYISGGG
SIVAHTVKAAVGIDVPMKLGGFLFALVLAFVVWLSTRAVDRISTIMLGGMILTFFSSVSG
LMFNVQPAVLFDTGDTSAPYSPFILATLPYFLTSFGYHGNVPGLVKYYNKDPKAVAKTII
YGSFLGLILYVCWQLSVLGNIPREEFLDIVAKGGNMGILVGALSKVTGSTNLDYLLQVFS
HLAVATSFLGVTLGLFDCIADTLGFDDSRLGRTKTAIVTFVPPAIGGLFYPDGFIMAIGF
AGLAATVFAVIVPAMMALATRRKFGNTTYRAPGGNVMLYVTIAYGITVAICHVLTMFDML
PVYGK
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory