Comparing 208295 MicrobesOnline__882:208295 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 4 hits to proteins with known functional sites (download)
5ys3A 1.8 angstrom crystal structure of succinate-acetate permease from citrobacter koseri (see paper)
61% identity, 98% coverage: 4:182/183 of query aligns to 1:179/188 of 5ys3A
5ys8A 2.8 angstrom crystal structure of succinate-acetate permease from citrobacter koseri (see paper)
62% identity, 97% coverage: 6:182/183 of query aligns to 2:178/182 of 5ys8A
P0AC98 Succinate-acetate/proton symporter SatP; Succinate-acetate transporter protein from Escherichia coli (strain K12) (see paper)
60% identity, 99% coverage: 2:182/183 of query aligns to 3:183/188 of P0AC98
P41943 Glyoxylate pathway regulator from Yarrowia lipolytica (strain CLIB 122 / E 150) (Yeast) (Candida lipolytica) (see paper)
37% identity, 91% coverage: 4:169/183 of query aligns to 76:247/270 of P41943
Sites not aligning to the query:
>208295 MicrobesOnline__882:208295
METRYANPAPLGLMGFGMTTVLLNIHNAGFFPISAMVLAMGIFYGGLAQVIAGIMEFRKG
NTFGTTAFTSYGLFWLSLVGLIVMPRLGWAEATPHAYMGWYLFMWGVFTLFMLLGTLRSS
VVLRLIFLLLTVLFFLLAARDWTGSETIGTIAGWEGILTGACAIYLAMAEVLHEQLGRKV
LPF
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory