Comparing 208542 MicrobesOnline__882:208542 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 5 hits to proteins with known functional sites (download)
5odqB Heterodisulfide reductase / [nife]-hydrogenase complex from methanothermococcus thermolithotrophicus soaked with bromoethanesulfonate. (see paper)
25% identity, 52% coverage: 177:397/422 of query aligns to 1:238/291 of 5odqB
5odhH Heterodisulfide reductase / [nife]-hydrogenase complex from methanothermococcus thermolithotrophicus soaked with heterodisulfide for 3.5 minutes (see paper)
25% identity, 52% coverage: 177:397/422 of query aligns to 1:238/291 of 5odhH
Sites not aligning to the query:
5odhB Heterodisulfide reductase / [nife]-hydrogenase complex from methanothermococcus thermolithotrophicus soaked with heterodisulfide for 3.5 minutes (see paper)
25% identity, 52% coverage: 177:397/422 of query aligns to 1:238/291 of 5odhB
5odcB Heterodisulfide reductase / [nife]-hydrogenase complex from methanothermococcus thermolithotrophicus at 2.3 a resolution (see paper)
25% identity, 52% coverage: 177:397/422 of query aligns to 1:238/291 of 5odcB
7bkbB Formate dehydrogenase - heterodisulfide reductase - formylmethanofuran dehydrogenase complex from methanospirillum hungatei (hexameric, composite structure) (see paper)
23% identity, 52% coverage: 178:397/422 of query aligns to 3:242/296 of 7bkbB
>208542 MicrobesOnline__882:208542
MLQELDDHMVACMKCGMCQAVCPVFAETMKEADVTRGKIALLENLAKEMVSDPEGVQEKL
NKCLLCGSCGANCPSGVKIMDIFLRARCIVNSYMGLSPVKKAILRGMLTNPKLFNALLDM
GSVFQGLFTTKVNDLLGSSCSKILSPIIGDRHFVGLASKSLHSRIKSLDTPAGKSGVKVA
FFPGCLGDKMFTSVADACLKVFSHHGVGVYMPEGMACCGIPSLASGDRVSYDKLVKLNLD
LFAKGKFDYLVTPCATCTATIKEIWPKMMGDYPFEMRKQIEELEKKTMDVNAFVVDVLGV
TPAADAPKGNVKVTFHDSCHMKKSLGVTAQPRNLIRMNPKYDLVEMAECDRCCGSGGSFN
LYHYDLSKQIGERKRQNIVDSGAQVVSTGCPACMLQMTDMLSQHGDRVAVKHCIEIYADS
LG
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory