Comparing 208684 MicrobesOnline__882:208684 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 2 hits to proteins with known functional sites (download)
P94530 Arabinooligosaccharides transport system permease protein AraQ from Bacillus subtilis (strain 168) (see paper)
26% identity, 92% coverage: 24:277/277 of query aligns to 22:280/281 of P94530
P68183 Maltose/maltodextrin transport system permease protein MalG from Escherichia coli (strain K12) (see 2 papers)
27% identity, 76% coverage: 68:277/277 of query aligns to 80:295/296 of P68183
>208684 MicrobesOnline__882:208684
MKQTNIYDSRGLARALDTTAAWTLAIMWALPLLYAIWTAFHPSAYSTRFTLNAPLTLENF
VTAWHAAPFALYFVNTVLLVTMVLAAQLVLCTLAAYAFAKYDFRGKNIMFALVLMQLMIM
PDVLVVENYRTMASIGVLDSTLAIGLPYMASAFGIFLLRQTFKSIPKELDEAAAVEGAST
LQILWKVYVPLGKPVYLAYALVSISYHWNNFLWPLIVTNTTNSRPLTVGLQVFSSTEQGV
DWAIITAATLMTSGPLLVAFLLFQRQFVQSFMRAGIK
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory