SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 208937 FitnessBrowser__DvH:208937 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

8y4wA Sialic acid bound form of tripartite atp-independent periplasmic (trap) transporter from fusobacterium nucleatum.
28% identity, 60% coverage: 32:144/188 of query aligns to 18:130/612 of 8y4wA

query
sites
8y4wA
G
 
G
M
 
M
A
 
F
V
 
V
L
 
I
V
 
L
A
 
V
V
 
M
Q
 
Q
V
 
I
F
 
F
S
 
S
R
 
R
Y
 
Q
A
 
I
L
 
F
N
 
N
E
 
S
S
 
P
L
 
L
F
 
I
W
 
W
S
 
S
E
 
E
E
 
E
L
 
L
G
 
S
R
 
R
I
 
L
L
 
I
L
 
F
V
 
V
Q
 
Y
L
 
V
T
 
G
F
 
L
I
 
L
G
 
G
C
 
V
A
 
S
V
 
M
A
 
G
V
 
I
R
 
R
A
 
S
G
 
Q
A
 
Q
H
 
H
P
 
I
G
 
M
M
 
I
D
 
D
A
 
F
L
 
L
V
 
Y
R
 
A
H
 
K
L
 
F
P
 
P
R
 
K
R
 
S
G
 
M
R
 
Q
H
 
K
V
 
I
T
 
I
H
 
F
M
 
T
L
 
I
V
 
I
L
 
Q
L
 
I
A
 
L
A
 
I
L
 
L
A
 
A
F
 
C
F
 
L
A
 
I
L
 
F
L
 
F
A
 
L
W
 
Y
H
 
F
G
 
G
A
 
-
R
 
-
F
 
Y
A
 
D
W
 
L
F
 
F
V
 
I
R
 
K
H
 
K
Q
 
E
S
 
E
T
 
I
P
 
E
-
 
I
-
 
V
A
 
S
L
 
L
G
 
G
L
 
I
S
 
S
R
 
M
L
 
K
I
 
W
P
 
M
A
 
Y
L
 
L
P
 
A
L
 
L
P
 
P
V
 
L

Sites not aligning to the query:

Query Sequence

>208937 FitnessBrowser__DvH:208937
MCALRLTARLLDTASEKADRAARLWLITAMAGMAVLVAVQVFSRYALNESLFWSEELGRI
LLVQLTFIGCAVAVRAGAHPGMDALVRHLPRRGRHVTHMLVLLAALAFFALLAWHGARFA
WFVRHQSTPALGLSRLIPALPLPVGGALSMLHVLAILARHATGDRQGGGDDGLADHASDT
PSPTGDRP

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory