Comparing 209026 MicrobesOnline__882:209026 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
P94529 Arabinooligosaccharides transport system permease protein AraP from Bacillus subtilis (strain 168) (see paper)
28% identity, 57% coverage: 39:205/295 of query aligns to 65:231/313 of P94529
>209026 MicrobesOnline__882:209026
MAKRNAFRNASIAVVALWLGLFALLPNAGLLLVTVLQRGEQDFVEPVFTLANYARLFDPT
FLRILWDSIALAATSTFVCLLVGYPFAYRIAMARRSVRPWFLLLVIIPFWTNSLIRTYAL
IILLKSQGLVSDVLLFLGFIDAPISLMYSDLAVFVGLTYTLLPFMILPLYVSIDKLDRKL
LDAAKDLGAGSLRAFWHVTLPLTMPGIVAGSMLVFLPSLACFYIPEILGGAKAMLIGNFI
KNQFLVARDWPLGAAASTILTLLLVLLIVAWWLASRRVAAREKHEQDAALFTEAG
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory