SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 209026 MicrobesOnline__882:209026 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

P94529 Arabinooligosaccharides transport system permease protein AraP from Bacillus subtilis (strain 168) (see paper)
28% identity, 57% coverage: 39:205/295 of query aligns to 65:231/313 of P94529

query
sites
P94529
G
 
G
E
 
E
Q
 
V
D
 
S
F
 
F
V
 
V
E
 
-
P
 
-
V
 
-
F
 
-
T
 
G
L
 
L
A
 
S
N
 
N
Y
 
Y
A
 
T
R
 
A
L
 
L
F
 
N
D
 
N
P
 
P
T
 
T
F
 
F
L
 
Y
R
 
T
I
 
A
L
 
L
W
 
W
D
 
N
S
 
T
I
 
L
A
 
E
L
 
Y
A
 
-
A
 
-
T
 
-
S
 
-
T
 
T
F
 
F
V
 
W
C
 
T
L
 
L
L
 
I
V
 
V
G
 
L
Y
 
I
P
 
P
F
 
V
A
 
P
Y
 
L
R
 
L
I
 
L
A
 
A
M
 
I
A
 
F
R
 
L
R
 
N
S
 
S
-
 
K
-
 
L
-
 
V
-
 
K
V
 
F
R
 
R
P
 
N
W
 
I
F
 
F
L
 
K
L
 
S
L
 
A
V
 
L
I
 
F
I
 
I
P
 
P
F
 
A
W
 
L
T
 
T
N
 
S
S
 
T
L
 
I
I
 
V
R
 
A
-
 
G
-
 
I
T
 
I
Y
 
F
A
 
R
L
 
L
I
 
I
I
 
F
L
 
G
L
 
E
K
 
M
S
 
E
Q
 
T
G
 
S
L
 
L
V
 
A
S
 
N
D
 
S
V
 
I
L
 
L
L
 
L
F
 
K
L
 
L
G
 
G
F
 
F
I
 
-
D
 
-
A
 
S
P
 
P
I
 
Q
S
 
N
L
 
W
M
 
M
Y
 
N
S
 
N
D
 
E
-
 
H
L
 
T
A
 
G
V
 
M
F
 
F
V
 
L
G
 
M
L
 
V
-
 
L
-
 
L
-
 
A
T
 
S
Y
 
W
T
 
R
L
 
W
L
 
M
P
 
G
F
 
I
M
 
N
I
 
I
L
 
L
P
 
Y
L
 
F
Y
 
L
V
 
A
S
 
G
I
 
L
D
 
Q
K
 
N
L
 
V
D
 
P
R
 
K
K
x
E
L
 
L
L
 
Y
D
x
E
A
 
A
A
 
A
K
 
D
D
 
I
L
x
D
G
 
G
A
 
A
G
 
N
S
 
T
L
 
M
R
 
K
A
 
K
F
 
F
W
 
L
H
 
H
V
 
I
T
 
T
L
 
L
P
 
P
L
 
F
T
 
L
M
 
K
P
 
P

Query Sequence

>209026 MicrobesOnline__882:209026
MAKRNAFRNASIAVVALWLGLFALLPNAGLLLVTVLQRGEQDFVEPVFTLANYARLFDPT
FLRILWDSIALAATSTFVCLLVGYPFAYRIAMARRSVRPWFLLLVIIPFWTNSLIRTYAL
IILLKSQGLVSDVLLFLGFIDAPISLMYSDLAVFVGLTYTLLPFMILPLYVSIDKLDRKL
LDAAKDLGAGSLRAFWHVTLPLTMPGIVAGSMLVFLPSLACFYIPEILGGAKAMLIGNFI
KNQFLVARDWPLGAAASTILTLLLVLLIVAWWLASRRVAAREKHEQDAALFTEAG

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory