Comparing 209324 MicrobesOnline__882:209324 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
51% identity, 95% coverage: 7:247/255 of query aligns to 1:239/241 of 4u00A
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
50% identity, 90% coverage: 18:247/255 of query aligns to 11:239/240 of 4ymuJ
3c4jA Abc protein artp in complex with atp-gamma-s
47% identity, 94% coverage: 8:247/255 of query aligns to 3:241/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
47% identity, 94% coverage: 8:247/255 of query aligns to 3:241/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
47% identity, 94% coverage: 8:247/255 of query aligns to 3:241/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
47% identity, 94% coverage: 8:247/255 of query aligns to 3:241/242 of 2oljA
P02915 Histidine/lysine/arginine/ornithine transport ATP-binding protein HisP; EC 7.4.2.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
44% identity, 96% coverage: 1:245/255 of query aligns to 2:254/258 of P02915
1b0uA Atp-binding subunit of the histidine permease from salmonella typhimurium (see paper)
44% identity, 93% coverage: 9:245/255 of query aligns to 3:250/258 of 1b0uA
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
40% identity, 88% coverage: 19:243/255 of query aligns to 14:240/343 of P30750
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
39% identity, 88% coverage: 19:243/255 of query aligns to 15:241/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
39% identity, 88% coverage: 19:243/255 of query aligns to 15:241/344 of 3tuiC
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
39% identity, 88% coverage: 19:243/255 of query aligns to 15:241/344 of 6cvlD
Sites not aligning to the query:
5xu1B Structure of a non-canonical abc transporter from streptococcus pneumoniae r6 (see paper)
41% identity, 76% coverage: 23:216/255 of query aligns to 22:215/226 of 5xu1B
7d0aB Acinetobacter mlafedb complex in adp-vanadate trapped vclose conformation (see paper)
36% identity, 89% coverage: 8:233/255 of query aligns to 4:230/263 of 7d0aB
7d08B Acinetobacter mlafedb complex in atp-bound vtrans1 conformation (see paper)
36% identity, 89% coverage: 8:233/255 of query aligns to 4:230/263 of 7d08B
6z5uK Cryo-em structure of the a. Baumannii mlabdef complex bound to appnhp (see paper)
36% identity, 89% coverage: 8:233/255 of query aligns to 2:228/253 of 6z5uK
6z4wA Ftse structure from streptococcus pneumoniae in complex with adp (space group p 1) (see paper)
34% identity, 83% coverage: 19:230/255 of query aligns to 15:225/230 of 6z4wA
Sites not aligning to the query:
6z67B Ftse structure of streptococcus pneumoniae in complex with amppnp at 2.4 a resolution (see paper)
35% identity, 83% coverage: 20:230/255 of query aligns to 16:225/229 of 6z67B
Sites not aligning to the query:
P9WQK5 Uncharacterized ABC transporter ATP-binding protein Rv0073 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
45% identity, 79% coverage: 1:202/255 of query aligns to 1:201/330 of P9WQK5
2pclA Crystal structure of abc transporter with complex (aq_297) from aquifex aeolicus vf5
38% identity, 85% coverage: 8:223/255 of query aligns to 3:217/223 of 2pclA
>209324 MicrobesOnline__882:209324
MTDNATPILRVEHLSVALGGRPILRDVSLDVDRGQLKVLIGPSGAGKSTLLQCINHLILP
DAGTVSLEGRAVDAHRKADLYAFRQQVGMIFQEFNLFDHLDALSNVSIALRKVRGMSRAA
ARERAMAELERVGLSSRHALYPAQLSGGQKQRVAIARALAMDPKVMLLDEPTSALDPELV
GEVLAVIRDLAKGGMTMVMATHQMDFARALANEIVFMERGAIIERGSPAELLAPGAGTRT
QDFCSRLTDLCEESC
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory