SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 209325 MicrobesOnline__882:209325 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
29% identity, 90% coverage: 13:214/224 of query aligns to 13:214/214 of 4ymwC

query
sites
4ymwC
P
 
P
A
 
L
L
 
F
N
 
I
R
 
S
G
 
G
L
 
L
I
 
I
T
 
M
S
 
T
M
 
L
M
 
K
L
 
L
I
 
T
V
 
F
P
 
L
S
 
A
A
 
V
T
 
T
L
 
I
G
 
G
L
 
V
L
 
L
F
 
M
G
 
G
I
 
L
I
 
F
V
 
I
G
 
A
T
 
L
G
 
M
R
 
K
V
 
M
F
 
S
G
 
S
P
 
I
A
 
K
W
 
P
V
 
I
R
 
K
K
 
L
A
 
V
G
 
A
D
 
S
I
 
S
Y
 
Y
T
 
I
A
 
E
T
 
V
F
 
I
R
 
R
G
 
G
V
 
T
P
 
P
L
 
L
V
 
L
V
 
V
Q
 
Q
L
 
L
M
 
L
I
 
L
I
 
I
Y
 
Y
F
 
N
G
 
G
L
 
L
P
 
M
N
 
Q
I
 
F
G
 
G
I
 
M
Y
 
N
L
 
I
E
 
P
P
 
A
F
 
F
P
 
T
A
 
A
A
 
G
V
 
V
L
 
S
G
 
A
F
 
L
V
 
A
L
 
I
C
x
N
S
 
S
A
 
S
A
 
A
Y
|
Y
N
 
V
S
 
A
E
 
E
Y
 
I
V
 
I
R
 
R
G
 
A
A
 
G
L
 
I
L
 
Q
S
 
A
I
 
V
R
 
D
Q
 
P
G
 
G
Q
 
Q
L
 
N
K
 
E
A
 
A
A
 
A
Q
 
R
A
 
S
L
 
L
G
 
G
F
 
M
S
 
T
K
 
H
L
 
A
K
 
M
T
 
A
V
 
M
L
 
R
F
 
Y
I
 
V
V
 
I
V
 
I
P
 
P
Q
 
Q
A
 
A
V
 
I
R
 
K
R
 
N
A
 
I
L
 
L
P
 
P
G
 
A
C
 
L
G
 
G
N
 
N
E
|
E
I
 
F
I
 
I
Y
 
V
L
 
M
I
 
L
K
 
K
Y
x
E
S
 
S
S
 
A
L
 
I
A
 
V
Y
 
S
V
 
V
I
 
I
T
 
G
C
 
F
I
 
A
E
 
D
L
 
L
T
 
T
G
 
R
E
 
Q
G
 
A
K
 
D
V
 
I
V
 
I
A
 
Q
A
 
S
R
 
V
S
 
T
F
 
Y
R
 
R
F
 
Y
T
 
F
E
 
E
V
 
P
F
 
Y
L
 
I
F
 
I
V
 
I
G
 
A
A
 
A
Y
 
I
Y
 
Y
L
 
F
F
 
V
L
 
M
V
 
T
T
 
L
L
 
T
A
 
F
S
 
S
W
 
K
I
 
L
L
 
L
H
 
S
R
 
L
V
 
F
E
 
E
Q
 
R
H
 
R
F
 
L

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
29% identity, 90% coverage: 13:214/224 of query aligns to 13:214/215 of 4ymtC

query
sites
4ymtC
P
 
P
A
 
L
L
 
F
N
 
I
R
 
S
G
 
G
L
 
L
I
 
I
T
 
M
S
 
T
M
 
L
M
 
K
L
 
L
I
 
T
V
 
F
P
 
L
S
 
A
A
 
V
T
 
T
L
 
I
G
 
G
L
 
V
L
 
L
F
 
M
G
 
G
I
 
L
I
 
F
V
 
I
G
 
A
T
 
L
G
 
M
R
 
K
V
 
M
F
 
S
G
 
S
P
 
I
A
 
K
W
 
P
V
 
I
R
 
K
K
 
L
A
 
V
G
 
A
D
 
S
I
 
S
Y
 
Y
T
 
I
A
 
E
T
 
V
F
 
I
R
 
R
G
 
G
V
 
T
P
|
P
L
|
L
V
 
L
V
 
V
Q
 
Q
L
 
L
M
 
L
I
 
L
I
 
I
Y
 
Y
F
 
N
G
 
G
L
 
L
P
 
M
N
 
Q
I
 
F
G
 
G
I
 
M
Y
 
N
L
 
I
E
 
P
P
 
A
F
 
F
P
 
T
A
 
A
A
 
G
V
 
V
L
 
S
G
 
A
F
 
L
V
 
A
L
 
I
C
x
N
S
 
S
A
 
S
A
 
A
Y
|
Y
N
 
V
S
 
A
E
 
E
Y
 
I
V
 
I
R
 
R
G
 
A
A
 
G
L
 
I
L
 
Q
S
 
A
I
 
V
R
 
D
Q
 
P
G
 
G
Q
 
Q
L
 
N
K
 
E
A
 
A
A
 
A
Q
 
R
A
 
S
L
 
L
G
 
G
F
 
M
S
 
T
K
 
H
L
 
A
K
 
M
T
 
A
V
 
M
L
 
R
F
 
Y
I
 
V
V
 
I
V
 
I
P
 
P
Q
 
Q
A
 
A
V
 
I
R
 
K
R
 
N
A
 
I
L
 
L
P
 
P
G
 
A
C
 
L
G
 
G
N
 
N
E
|
E
I
 
F
I
 
I
Y
 
V
L
x
M
I
 
L
K
|
K
Y
x
E
S
 
S
S
 
A
L
 
I
A
 
V
Y
 
S
V
 
V
I
 
I
T
 
G
C
 
F
I
 
A
E
 
D
L
 
L
T
 
T
G
 
R
E
 
Q
G
 
A
K
 
D
V
 
I
V
 
I
A
 
Q
A
 
S
R
 
V
S
 
T
F
 
Y
R
 
R
F
 
Y
T
 
F
E
 
E
V
 
P
F
 
Y
L
 
I
F
 
I
V
 
I
G
 
A
A
 
A
Y
 
I
Y
 
Y
L
 
F
F
 
V
L
 
M
V
 
T
T
 
L
L
 
T
A
 
F
S
 
S
W
 
K
I
 
L
L
 
L
H
 
S
R
 
L
V
 
F
E
 
E
Q
 
R
H
 
R
F
 
L

Query Sequence

>209325 MicrobesOnline__882:209325
MFDPDFVFGEMLPALNRGLITSMMLIVPSATLGLLFGIIVGTGRVFGPAWVRKAGDIYTA
TFRGVPLVVQLMIIYFGLPNIGIYLEPFPAAVLGFVLCSAAYNSEYVRGALLSIRQGQLK
AAQALGFSKLKTVLFIVVPQAVRRALPGCGNEIIYLIKYSSLAYVITCIELTGEGKVVAA
RSFRFTEVFLFVGAYYLFLVTLASWILHRVEQHFSIPGFGRAKQ

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory