SitesBLAST

SitesBLAST – Find functional sites

SitesBLAST

Comparing 209566 MicrobesOnline__882:209566 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 15 hits to proteins with known functional sites (download)

P52759 2-iminobutanoate/2-iminopropanoate deaminase; Liver perchloric acid-soluble protein; L-PSP; Reactive intermediate imine deaminase A homolog; Translation inhibitor L-PSP ribonuclease; UK114 antigen homolog; rp14.5; EC 3.5.99.10 from Rattus norvegicus (Rat) (see paper)
43% identity, 95% coverage: 4:124/127 of query aligns to 6:126/137 of P52759

query
sites
P52759

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Sites not aligning to the query:

1 modified: Initiator methionine, Removed
2 modified: N-acetylserine

P80601 2-iminobutanoate/2-iminopropanoate deaminase; 14.3 kDa perchloric acid soluble protein; Translation inhibitor L-PSP ribonuclease; UK114 antigen; EC 3.5.99.10; EC 3.1.-.- from Capra hircus (Goat) (see paper)
43% identity, 95% coverage: 4:124/127 of query aligns to 6:126/137 of P80601

query
sites
P80601

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Sites not aligning to the query:

1 modified: Initiator methionine, Removed
2 modified: N-acetylserine

A0A1J1DL12 2-iminobutanoate/2-iminopropanoate deaminase; Allergen Der f 34; Enamine/imine deaminase; Allergen Der f 34.0101; EC 3.5.99.10 from Dermatophagoides farinae (American house dust mite) (see paper)
40% identity, 91% coverage: 12:127/127 of query aligns to 12:127/128 of A0A1J1DL12

query
sites
A0A1J1DL12

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Y19 (= Y19) mutation to A: Loss of imine deaminase activity; when associated with A-33; A-59; A-91; A-105; A-114 and A-120.
G33 (= G33) mutation to A: Loss of imine deaminase activity; when associated with A-19; A-59; A-91; A-105; A-114 and A-120.
N59 (= N59) mutation to A: Loss of imine deaminase activity; when associated with A-19; A-33; A-91; A-105; A-114 and A-120.
N91 (= N91) mutation to A: Loss of imine deaminase activity; when associated with A-19; A-33; A-59; A-105; A-114 and A-120.
R105 (= R105) mutation to A: Loss of imine deaminase activity; when associated with A-19; A-33; A-59; A-91; A-114 and A-120.
P114 (= P114) mutation to A: Loss of imine deaminase activity; when associated with A-19; A-33; A-59; A-91; A-105 and A-120.
E120 (≠ L120) mutation to A: Loss of imine deaminase activity; when associated with A-19; A-33; A-59; A-91; A-105 and A-114.

Sites not aligning to the query:

1 modified: Initiator methionine, Removed

3k0tC Crystal structure of pspto -psp protein in complex with d-beta-glucose from pseudomonas syringae pv. Tomato str. Dc3000 (see paper)
42% identity, 91% coverage: 12:127/127 of query aligns to 9:123/124 of 3k0tC

query
sites
3k0tC

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binding beta-D-glucopyranose: Y16 (= Y19), G30 (= G33), I32 (≠ L35), F83 (= F87), R101 (= R105), R111 (≠ L115), E116 (≠ L120)

2b33B Crystal structure of a putative endoribonuclease (tm0215) from thermotoga maritima msb8 at 2.30 a resolution
41% identity, 89% coverage: 12:124/127 of query aligns to 9:121/126 of 2b33B

query
sites
2b33B

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binding calcium ion: D35 (= D38), E37 (≠ A40)

Q94JQ4 Reactive Intermediate Deaminase A, chloroplastic; 2-iminobutanoate/2-iminopropanoate deaminase; EC 3.5.99.10 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
41% identity, 91% coverage: 12:127/127 of query aligns to 72:187/187 of Q94JQ4

query
sites
Q94JQ4

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R165 (= R105) mutation to A: Loss of activity.

7cd4A Crystal structure of the s103f mutant of bacillus subtilis (natto) yabj protein. (see paper)
39% identity, 89% coverage: 12:124/127 of query aligns to 9:120/124 of 7cd4A

query
sites
7cd4A

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binding zinc ion: E47 (= E51)

Sites not aligning to the query:

binding zinc ion: 5, 8

Q7CP78 2-iminobutanoate/2-iminopropanoate deaminase; Enamine/imine deaminase; EC 3.5.99.10 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
39% identity, 93% coverage: 7:124/127 of query aligns to 5:124/128 of Q7CP78

query
sites
Q7CP78

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Y17 (= Y19) mutation to F: Deaminase activity is defective. At pH 8, strongly reduces the increase in rate of 2-ketobutyrate formation over the rate of IlvA alone. At pH 9.5, moderately reduces the increase in rate of 2-ketobutyrate formation over the rate of IlvA alone.
R105 (= R105) mutation to A: Deaminase activity is defective. At pH 8 and 9.5, strongly reduces the increase in rate of 2-ketobutyrate formation over the rate of IlvA alone.
E120 (≠ L120) Important for catalytic activity at high pH; mutation to A: Deaminase activity is defective. At pH 8, moderately reduces the increase in rate of 2-ketobutyrate formation over the rate of IlvA alone. At pH 9.5, strongly reduces the increase in rate of 2-ketobutyrate formation over the rate of IlvA alone.; mutation to K: Deaminase activity is defective. At pH 8, moderately reduces the increase in rate of 2-ketobutyrate formation over the rate of IlvA alone. At pH 9.5, strongly reduces the increase in rate of 2-ketobutyrate formation over the rate of IlvA alone.

2uynA Crystal structure of e. Coli tdcf with bound 2-ketobutyrate (see paper)
39% identity, 89% coverage: 12:124/127 of query aligns to 9:123/127 of 2uynA

query
sites
2uynA

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I

I

binding 2-ketobutyric acid: F83 (= F87), R104 (= R105), S105 (≠ T106), C106 (≠ A107)

2uykC Crystal structure of e. Coli tdcf with bound serine (see paper)
39% identity, 89% coverage: 12:124/127 of query aligns to 9:123/127 of 2uykC

query
sites
2uykC

A

A

P

P

A

G

P

A

V

I

A

G

P

P

Y

Y

S

V

P

Q

G

G

M

V

V

D

C

L

G

G

S

S

F

M

L

V

F

F

V

T

S

S

G

G

Q

Q

L

I

P

P

L

V

D

C

A

P

A

Q

T

T

G

G

V

-

L

E

I

I

E

P

G

A

D

D

I

V

R

Q

E

D

R

Q

T

A

R

R

Q

L

A

S

L

L

R

E

N

N

M

V

Q

K

A

A

V

I

V

V

R

V

A

A

G

G

C

L

E

S

L

V

S

G

C

D

A

I

V

I

R

K

V

M

N

T

I

V

Y

F

L

I

A

T

D

D

M

L

N

N

D

D

F

F

A

A

A

T

V

I

N

N

E

E

V

V

Y

Y

K

K

T

Q

F

F

C

D

K

E

-

H

-

Q

-

A

P

T

Y

Y

P

P

A

T

R
|
R

T
x
S

A
x
C

I

V

Q

Q

A

V

A

A

A

R

L

L

P

P

L

K

G

D

S

V

D

K

I

L

L

E

I

I

D

E

G

A

I

I

binding serine: R104 (= R105), S105 (≠ T106), C106 (≠ A107)

3vczB 1.80 angstrom resolution crystal structure of a putative translation initiation inhibitor from vibrio vulnificus cmcp6
40% identity, 89% coverage: 12:124/127 of query aligns to 9:124/127 of 3vczB

query
sites
3vczB

A

A

P

P

A

A

P

A

V

I

A

G

P

P

Y

Y

S

I

P

Q

G

G

M

V

V

D

C

L

G

G

S

N

F

M

L

V

F

L

V

T

S

S

G

G

Q

Q

L

I

P

P

L

V

D

N

A

P

A

A

T

T

G

G

V

-

L

E

I

V

E

P

G

A

D

D

I

I

R

A

E

A

R

Q

T

A

R

R

Q

Q

A

S

L

L

R

D

N

N

M

V

Q

K

A

A

V

V

R

E

A

A

A

S

G

G

C

L

E

T

L

V

S

G

C

D

A

I

V

V

R

K

V

M

N

T

I

V

Y

F

L

V

A

K

D
|
D

M

L

N
|
N

D

D

F

F

A

G

A

T

V

V

N

N

E

E

V

V

Y

Y

K

G

T

N

F

F

C

D

K

E

-

H

-

N

-

V

-

A

P

H

Y

Y

P

P

A

A

R

R

T

S

A

C

I

V

Q

E

A

V

A

A

A

R

L

L

P

P

L

K

G

D

S

V

D

G

I

I

L

E

I

I

D

E

G

A

I

I

binding magnesium ion: D79 (= D83), N81 (= N85)

5v4dA Crystal structure of the protein of unknown function of the conserved rid protein family yyfa from yersinia pestis
35% identity, 93% coverage: 7:124/127 of query aligns to 6:124/127 of 5v4dA

query
sites
5v4dA

I

I

L

E

P

T

G

K

G

N

A

A

P

P

A

S

P

A

V

I

A

G

P

P

Y

Y

S

S

P

Q

G

A

M

I

V

C

C

F

G

N

S

G

F

I

L

L

F

Y

V

A

S

S

G

G

Q

Q

L

I

P

P

L

I

D

N

A

P

A

D

T

T

G

G

V

D

L

L

I

V

E

E

G

N

D

D

I

I

R

E

E

K

R

Q

T

T

R

R

Q

Q

A

V

L

L

R

K

N

N

M

I

Q

D

A

A

V

V

V

L

R

L

A

Q

A

A

G

G

C

T

E

T

L

K

S

D

C

K

A

I

V

V

R

K

V

T

N

T

I

I

Y

F

L

I

A

T

D

N

M

I

N

N

D

N

F

S

A

S

A

Q

V

V

N

N

E
x
D

V

I

Y

Y

K

A

T
x
D

F

Y

F

F

C

K

K

G

P

T

-

I

Y

F

P

P

A

A

R

R

T

S

A

T

I

V

Q

E

A

V

A

S

A

A

L

L

P

P

L

K

G

G

S

A

D

L

I

V

L

E

I

I

D

E

G

V

I

I

binding calcium ion: D91 (≠ E92), D95 (≠ T96)

5hp8A Crystal structures of rida in complex with pyruvate (see paper)
39% identity, 85% coverage: 20:127/127 of query aligns to 1:108/108 of 5hp8A

query
sites
5hp8A

S

S

P

Q

G

A

M

I

V

K

C

A

G

N

S

N

F

L

L

V

F

F

V

L

S

S

G

G

Q

V

L

L

P

G

L

L

D

I

A

P

A

E

T

T

G

G

V

K

L

F

I

V

E

S

G

E

D

S

I

V

R

E

E

D

R

Q

T

T

R

E

Q

Q

A

V

L

L

R

K

N

N

M

M

Q

G

A

E

V

I

V

L

R

K

A

A

A

S

G

G

C

A

E

D

L

Y

S

S

C

S

A

V

V

V

R

K

V

T

N

T

I

I

Y

M

L

L

A

A

D

D

M

L

N

A

D

D

F

F

A

K

A

T

V

V

N

N

E

E

V

I

Y

Y

K

A

T

K

F

Y

F

F

C

P

K

A

P

P

Y

S

P

P

A

A

R
|
R

T

S

A
x
T

I

Y

Q

Q

A

V

A

A

L

L

P

P

L

L

G

N

S

A

D

K

I

I

L

E

I

I

D

E

G

C

I

I

F

A

A

T

L

L

binding pyruvic acid: R86 (= R105), T88 (≠ A107)

P0AFQ5 3-aminoacrylate deaminase RutC; 3-AA deaminase; EC 3.5.-.- from Escherichia coli (strain K12) (see paper)
36% identity, 81% coverage: 7:109/127 of query aligns to 6:108/128 of P0AFQ5

query
sites
P0AFQ5

I

I

L

I

P

P

G

A

G

G

A

S

P

S

A

A

P

P

V

L

A

A

P

P

Y

F

S

V

P

P

G

G

M

T

V

L

C

A

G

D

S

G

F

V

L

V

F

Y

V

V

S

S

G

G

Q

T

L

L

P

A

L

F

D

D

A

Q

A

H

T

N

G

N

V

V

L

L

I

F

E

A

G

D

D

D

I

P

R

K

E

A

R

Q

T

T

R

R

Q

H

A

V

L

L

R

E

N

T

M

I

Q

R

A

K

V

V

V

I

R

E

A

T

A

A

G

G

C

G

E

T

L

M

S

A

C

D

A

V

V

T

R

F

V

N

N

S

I

I

Y

F

L

I

A

T

D

D

M

W

N

K

D

N

F

Y

A

A

V

I

N

N

E

E

V

I

Y

Y

K

A

T

E

F

F

C

P

K

G

P

D

Y

K

P

P

A

A

R
|
R

T

F

A

C

I

I

Q

Q

R104 (= R105) mutation to A: Loss of activity.

3i3fA Hypothetical protein from giardia lamblia gl50803_14299
28% identity, 79% coverage: 11:110/127 of query aligns to 1:113/131 of 3i3fA

query
sites
3i3fA

G

G

A

M

P

P

A

T

P

P

V

T

A

F

P

L

Y

V

S

C

P

P

G

D

M

V

V

V

-

K

-
x
F

-

E

-

N

C
x
V

G

G

S

Q

F

I

L

A

F

V

V

V

S

N

G

G

Q

M

L

V

P

Y

L

L

D

G

A
x
G

A

S

T

V

G

G

V

I

L

D

I

K

E

S

G

G

D

T

I

L

R

H

-

K

-

G

-

L

-

E

E

E

R

Q

T

T

R

R

Q

Q

A

T

L

F

R

D

N

N

M

I

Q

R

A

K

V

C

V

L

R

E

A

Y

A

A

G

N

C

S

E

G

L

L

S

D

C

Y

A

I

V

V

R

S

V

L

N

N

I

I

Y

F

L

L

A

S

D

T

M

S

-

L

-

S

-

D

N

S

D

E

F

E

A

A

A

R

V

F

N

N

E

E

V

L

Y

Y

K

R

T

E

F

V

F

F

C

C

K

V

P

P

-

A

-

T

Y

R

P

P

A

C

R
|
R

T
x
C

A
x
C

I

V

Q

R

A

A

binding pentanoic acid: F16 (vs. gap), V19 (≠ C25), G33 (≠ A39), R108 (= R105), C109 (≠ T106), C110 (≠ A107)

Query Sequence

>209566 MicrobesOnline__882:209566
MADRYPILPGGAPAPVAPYSPGMVCGSFLFVSGQLPLDAATGVLIEGDIRERTRQALRNM
QAVVRAAGCELSCAVRVNIYLADMNDFAAVNEVYKTFFCKPYPARTAIQAAALPLGSDIL
IDGIFAL

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory