SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 2221882_149_317 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
31% identity, 92% coverage: 2:156/169 of query aligns to 45:221/240 of 4qhzC

query
sites
4qhzC
I
 
I
E
 
V
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L
F
 
F
N
 
D
G
 
G
K
 
K
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D
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L
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S
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A
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W
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E
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G
G
 
G
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A
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-
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W
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D
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V
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H
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D
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G
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K
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G
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D
L
 
I
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Q
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K
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F
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D
F
 
F
M
 
Q
L
 
M
H
 
H
V
 
I
D
 
E
F
 
W
R
 
Q
I
 
V
-
 
P
-
 
T
-
 
N
-
 
I
-
 
T
-
 
G
-
 
E
-
 
S
V
 
Q
E
 
S
H
 
R
S
 
G
N
|
N
S
|
S
G
 
G
I
 
I
G
 
F
L
 
L
R
 
Q
G
 
G
R
 
M
Y
 
Y
E
|
E
I
 
V
Q
|
Q
I
 
V
L
 
L
E
 
D
D
 
C
F
 
Y
G
 
N
K
 
N
P
 
P
P
 
T
N
 
Y
S
 
V
H
 
N
G
 
G
-
 
Q
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T
A
 
G
A
 
S
L
 
I
Y
 
Y
S
 
K
R
 
Q
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S
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I
P
 
P
S
 
L
V
 
A
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N
A
 
A
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M
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R
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P
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G
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E
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W
Q
 
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Y
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D
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I
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I
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Y
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A
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P
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T
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Y
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T
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R
 
P
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T
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T
 
T
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V
V
 
I
H
 
Q
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N
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G
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V
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L
L
 
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R
 
H
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T
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T
V
 
I
E
 
L
G
 
G
L
 
T
T
 
T
A
 
E
I
 
W
A
 
I
N
 
G
-
 
F
-
 
P
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Q
A
 
V
D
 
K
E
 
K
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H
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G
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A
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G
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P
F
 
I
I
 
I
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L
Q
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Q

Query Sequence

>2221882_149_317
PIELFNGKDLSGWKPLNPGAEMKWTVVDGVLRNAPPTTDLISEQKFWNFMLHVDFRIVEH
SNSGIGLRGRYEIQILEDFGKPPNSHGAAALYSRVPPSVNASKPAGEWQSYDIRLVGRTL
TVVHNGTKVLDRVEVEGLTAIANNADEAEPGPFIVQGDHSYVEIRKFTV

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory