SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 2224728_148_318 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
33% identity, 98% coverage: 4:171/171 of query aligns to 47:237/240 of 4qhzC

query
sites
4qhzC
L
 
L
F
 
F
N
 
D
G
 
G
K
 
K
D
 
D
L
 
L
T
 
S
G
 
A
W
 
W
E
 
E
A
 
S
F
 
V
P
 
K
A
 
G
G
 
G
A
 
A
V
 
A
N
 
-
H
 
E
W
 
W
V
 
D
A
 
V
Q
 
H
D
 
D
G
 
G
V
 
V
L
 
F
V
 
T
D
 
V
T
 
N
D
 
K
H
 
K
G
 
K
A
 
G
S
 
D
L
 
I
K
 
Q
T
 
T
T
 
K
R
 
Q
T
 
K
F
 
F
N
 
N
D
 
D
F
 
F
K
 
Q
L
 
M
H
 
H
I
 
I
E
 
E
F
 
W
N
 
Q
C
 
V
P
 
P
D
 
T
G
 
N
-
 
I
-
 
T
-
 
G
-
 
E
-
 
S
-
 
Q
-
 
S
-
 
R
G
 
G
N
|
N
S
|
S
G
 
G
I
 
I
Y
 
F
L
 
L
R
 
Q
G
 
G
R
 
M
D
 
Y
E
|
E
I
 
V
Q
|
Q
V
 
V
-
 
L
-
 
D
A
 
C
Y
 
Y
E
 
N
K
 
N
P
 
P
G
 
T
V
 
Y
E
 
V
D
 
N
K
 
G
F
 
-
H
 
-
D
 
Q
M
 
T
G
 
G
A
 
S
V
 
I
Y
 
Y
G
 
K
F
 
Q
V
 
S
A
 
I
P
 
P
T
 
L
A
 
A
E
 
N
V
 
A
P
 
M
R
 
R
T
 
K
P
 
P
G
 
G
T
 
E
W
 
W
E
 
N
S
 
V
F
 
Y
D
 
D
V
 
I
T
 
I
L
 
Y
I
 
T
-
 
A
-
 
P
-
 
T
-
 
F
-
 
K
-
 
E
-
 
D
G
 
G
R
 
S
Y
 
Y
-
 
R
-
 
T
-
 
H
-
 
P
-
 
T
V
 
V
T
 
T
I
 
V
V
 
I
R
 
Q
N
 
N
G
 
G
V
 
V
K
 
V
T
 
L
V
 
Q
D
 
N
N
 
H
Q
 
T
E
 
T
I
 
I
A
 
L
G
 
G
P
 
T
S
 
T
G
 
E
-
 
W
-
 
I
G
 
G
A
 
F
L
 
P
D
 
Q
A
 
V
N
 
K
E
 
K
A
 
H
E
 
G
P
 
A
G
 
G
P
 
P
F
 
I
Y
 
I
L
 
L
Q
|
Q
-
 
S
-
 
H
G
 
G
D
 
D
H
 
P
T
 
S
G
 
E
N
 
P
M
 
I
K
 
S
Y
 
F
R
 
R
N
 
N
I
 
I
M
 
W
I
 
I

Query Sequence

>2224728_148_318
PEPLFNGKDLTGWEAFPAGAVNHWVAQDGVLVDTDHGASLKTTRTFNDFKLHIEFNCPDG
GNSGIYLRGRDEIQVAYEKPGVEDKFHDMGAVYGFVAPTAEVPRTPGTWESFDVTLIGRY
VTIVRNGVKTVDNQEIAGPSGGALDANEAEPGPFYLQGDHTGNMKYRNIMI

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory