SitesBLAST
Comparing 2629601447 IMG__TrieryIMS101_FD:2629601447 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
8ufjB Glutamine synthetase (see paper)
34% identity, 96% coverage: 4:436/451 of query aligns to 2:429/444 of 8ufjB
8tfkA Glutamine synthetase (see paper)
34% identity, 95% coverage: 9:436/451 of query aligns to 3:425/440 of 8tfkA
- binding adenosine-5'-diphosphate: E128 (= E140), D194 (≠ S203), F195 (≠ I204), F197 (≠ Y206), N243 (≠ H252), R312 (= R321), R317 (= R326), G325 (≠ P336), R327 (≠ H338)
- binding magnesium ion: E128 (= E140), E128 (= E140), E130 (= E142), E185 (= E194), E192 (= E201), E192 (= E201), H241 (= H250), E329 (= E340)
- binding l-methionine-s-sulfoximine phosphate: E128 (= E140), E130 (= E142), E185 (= E194), E192 (= E201), G237 (= G246), H241 (= H250), R294 (= R303), E300 (≠ W309), R312 (= R321), R331 (≠ K342)
8oozA Glutamine synthetase (see paper)
33% identity, 98% coverage: 9:451/451 of query aligns to 3:430/430 of 8oozA
- binding adenosine-5'-triphosphate: G117 (≠ A138), E170 (= E189), F185 (≠ I204), K186 (≠ R205), Y187 (= Y206), N233 (≠ H252), S235 (= S254), S315 (≠ P336), R317 (≠ H338)
- binding magnesium ion: E119 (= E140), H231 (= H250), E319 (= E340)
8ooqB Glutamine synthetase from Methanothermococcus thermolithotrophicus (see paper)
33% identity, 95% coverage: 10:436/451 of query aligns to 3:432/446 of 8ooqB
- binding 2-oxoglutaric acid: F16 (= F23), R18 (= R25), A32 (= A39), R86 (≠ A96), V92 (= V102), P169 (≠ R171), R172 (≠ I174), R173 (≠ D175), S189 (≠ Y191)
- binding magnesium ion: E137 (= E142), E192 (= E194), E199 (= E201)
8oooA Glutamine synthetase from methanothermococcus thermolithotrophicus in complex with 2-oxoglutarate and mgatp at 2.15 a resolution (see paper)
33% identity, 95% coverage: 10:436/451 of query aligns to 4:433/447 of 8oooA
- binding 2-oxoglutaric acid: F17 (= F23), R19 (= R25), A33 (= A39), R87 (≠ A96), V93 (= V102), P170 (≠ R171), R173 (≠ I174), R174 (≠ D175), S190 (≠ Y191)
- binding adenosine-5'-triphosphate: E136 (= E140), E188 (= E189), F203 (≠ I204), K204 (≠ R205), F205 (≠ Y206), H251 (= H252), S253 (= S254), R325 (= R326), R335 (≠ H338)
8ooxB Glutamine synthetase (see paper)
32% identity, 98% coverage: 9:451/451 of query aligns to 3:438/438 of 8ooxB
7tdpA Structure of paenibacillus polymyxa gs bound to met-sox-p-adp (transition state complex) to 1.98 angstom (see paper)
32% identity, 94% coverage: 10:433/451 of query aligns to 5:421/439 of 7tdpA
- binding adenosine-5'-diphosphate: N123 (≠ K136), G125 (≠ A138), E127 (= E140), E179 (= E189), D193 (≠ S203), Y196 (= Y206), N242 (≠ H252), S244 (= S254), R316 (= R326), R326 (≠ H338)
- binding magnesium ion: E127 (= E140), E127 (= E140), E129 (= E142), E184 (= E194), E191 (= E201), E191 (= E201), H240 (= H250), E328 (= E340)
- binding l-methionine-s-sulfoximine phosphate: E127 (= E140), E129 (= E142), E184 (= E194), E191 (= E201), G236 (= G246), H240 (= H250), R293 (= R303), E299 (≠ W309), R311 (= R321), R330 (≠ K342)
7tfaB Glutamine synthetase (see paper)
32% identity, 94% coverage: 10:433/451 of query aligns to 5:423/441 of 7tfaB
- binding glutamine: E131 (= E142), Y153 (≠ F161), E186 (= E194), G238 (= G246), H242 (= H250), R295 (= R303), E301 (≠ W309)
- binding magnesium ion: E129 (= E140), E131 (= E142), E186 (= E194), E193 (= E201), H242 (= H250), E330 (= E340)
- binding : Y58 (≠ D67), R60 (≠ V69), V187 (≠ S195), N237 (≠ A245), G299 (≠ H307), Y300 (≠ F308), R313 (= R321)
Sites not aligning to the query:
P12425 Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I alpha; GSI alpha; EC 6.3.1.2 from Bacillus subtilis (strain 168) (see 5 papers)
31% identity, 98% coverage: 10:451/451 of query aligns to 7:444/444 of P12425
- G59 (≠ S66) mutation to R: Unable to form stable complex with TnrA. In the presence of glutamine, this mutant derepresses amtB-lacZ fusion and glnRA-lacZ fusion.
- R62 (≠ V69) Important for inhibition by glutamine; mutation to A: Highly resistant to inhibition by glutamine and AMP. Regulation by TnrA and GlnR is abolished. Only small differences (less than 2-fold) in its steady-state kinetic constants compared with the wild-type. Similar sensitivity to Met-Sox that compared to the wild-ytpe.
- E132 (= E140) binding Mg(2+)
- E134 (= E142) binding Mg(2+)
- E189 (= E194) binding Mg(2+)
- V190 (≠ S195) mutation to A: Unable to form stable complex with TnrA. In the presence of glutamine, this mutant partially relieves expression of the glnRA-lacZ fusion, but has no effect on the TnrA-dependent regulation of amtB-lacZ fusion. Resistant to inhibition by MetSox.
- E196 (= E201) binding Mg(2+)
- G241 (= G246) binding L-glutamate
- H245 (= H250) binding Mg(2+)
- G302 (≠ H307) mutation to E: Unable to form stable complex with TnrA. In the presence of glutamine, amtB-lacZ fusion is only 4-fold regulated by TnrA, whereas glnRA-lacZ fusion is derepressed. This mutant retains enzymatic specific activity with a 2-fold decrease of the affinity for glutamate and glutamine compared to the wild-type. Slightly less sensitive to inhibition by glutamine.
- E304 (≠ W309) mutation to A: Highly resistant to Met-Sox inhibition. 8- and 2-fold increase of the affinity for glutamate and ATP, respectively. Strong decrease of the affinity for ammonium.
- P306 (≠ G311) mutation to H: Unable to form stable complex with TnrA. In the presence of glutamine, this mutant completely derepresses glnRA-lacZ fusion, whereas amtB-lacZ fusion expression is only partially derepresses.
- E333 (= E340) binding Mg(2+)
- E424 (= E431) mutation to K: Unable to form stable complex with TnrA. In the presence of glutamine, this mutant derepresses amtB-lacZ fusion and glnRA-lacZ fusion. Although it is defective in regulation, this mutant retains enzymatic specific activity and similar affinity for ATP, glutamate and glutamine compared to the wild-type. Slightly less sensitive to inhibition by glutamine.
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed
4lnkA B. Subtilis glutamine synthetase structures reveal large active site conformational changes and basis for isoenzyme specific regulation: structure of gs-glutamate-amppcp complex (see paper)
31% identity, 98% coverage: 10:451/451 of query aligns to 6:443/443 of 4lnkA
- active site: D52 (≠ T56), E131 (= E140), E133 (= E142), E188 (= E194), E195 (= E201), H244 (= H250), R315 (= R321), E332 (= E340), R334 (≠ K342)
- binding adenosine-5'-diphosphate: K43 (≠ E47), M50 (≠ S54), F198 (≠ I204), Y200 (= Y206), N246 (≠ H252), S248 (= S254), S324 (≠ N330), S328 (≠ P336), R330 (≠ H338)
- binding glutamic acid: E133 (= E142), E188 (= E194), V189 (≠ S195), N239 (≠ A245), G240 (= G246), G242 (= G248), E303 (≠ W309)
- binding magnesium ion: E131 (= E140), E188 (= E194), E195 (= E201), H244 (= H250), E332 (= E340)
4lniA B. Subtilis glutamine synthetase structures reveal large active site conformational changes and basis for isoenzyme specific regulation: structure of the transition state complex (see paper)
31% identity, 98% coverage: 10:451/451 of query aligns to 6:443/443 of 4lniA