SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 349857 BT0329 ketoisovalerate oxidoreductase subunit vorA (NCBI ptt file) to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 3 hits to proteins with known functional sites (download)

6n2oC 2-oxoglutarate:ferredoxin oxidoreductase from magnetococcus marinus with 2-oxoglutarate, coenzyme a and succinyl-coa bound (see paper)
29% identity, 96% coverage: 5:176/180 of query aligns to 7:178/572 of 6n2oC

query
sites
6n2oC
I
 
I
I
 
R
I
 
V
A
 
A
G
 
G
F
 
E
G
 
G
G
|
G
Q
 
E
G
|
G
V
x
I
L
x
I
S
|
S
M
 
S
G
 
G
K
 
D
I
 
F
L
 
I
A
 
A
Y
 
A
S
 
A
G
 
C
L
 
A
M
 
R
E
 
A
G
 
G
K
 
L
E
 
E
V
 
V
S
 
Y
W
 
T
M
 
F
P
 
K
A
 
T
Y
x
F
G
 
P
P
x
A
E
|
E
Q
x
I
R
 
K
G
 
G
G
 
G
T
 
Y
A
 
A
N
 
M
V
 
Y
T
 
Q
V
 
V
I
 
R
V
 
A
S
 
S
D
 
S
D
 
E
K
 
K
I
 
L
S
 
Y
S
 
C
P
 
Q
I
 
-
L
 
G
S
 
D
K
 
T
Y
 
F
D
 
D
T
 
V
A
 
F
I
 
C
I
 
A
L
 
F
N
 
N
Q
 
G
P
 
E
S
 
A
L
 
Y
E
 
E
K
 
Q
F
 
N
E
 
K
S
 
D
R
 
K
V
 
I
K
 
K
P
 
P
G
 
G
G
 
T
I
 
A
L
 
F
I
 
V
Y
 
Y
D
 
D
G
 
Y
Y
 
P
G
 
G
I
 
G
I
 
D
N
 
F
P
 
E
P
 
P
T
 
D
R
 
E
-
 
I
-
 
P
K
 
E
D
 
G
I
 
V
K
 
F
V
 
A
Y
 
Y
R
 
P
I
 
I
D
 
P
A
 
M
M
 
S
D
 
Q
A
 
T
A
 
A
N
 
K
E
 
E
M
 
M
N
 
K
N
 
S
A
 
Y
K
x
R
A
 
S
F
 
K
N
|
N
M
 
M
I
 
V
V
 
A
L
 
L
G
 
G
G
 
A
L
 
L
L
 
S
Q
 
E
L
 
L
R
 
F
P
 
N
I
 
I
V
 
S
T
 
-
L
 
-
E
 
E
N
 
N
V
 
T
I
 
L
K
 
K
G
 
E
-
 
V
L
 
L
K
 
S
K
 
D
T
 
K
L
x
F
P
 
G
E
 
K
R
 
K
H
 
G
H
 
E
H
 
E
L
 
V
I
 
L
P
 
A
M
 
F
N
|
N
E
 
L
E
 
E
A
 
A
I
 
F
K
 
D
K
 
K
G
 
G
M
 
K
E
 
A
L
 
L

Sites not aligning to the query:

6n2oA 2-oxoglutarate:ferredoxin oxidoreductase from magnetococcus marinus with 2-oxoglutarate, coenzyme a and succinyl-coa bound (see paper)
29% identity, 96% coverage: 5:176/180 of query aligns to 7:178/572 of 6n2oA

query
sites
6n2oA
I
 
I
I
 
R
I
 
V
A
 
A
G
 
G
F
 
E
G
 
G
G
|
G
Q
 
E
G
|
G
V
 
I
L
 
I
S
|
S
M
 
S
G
 
G
K
 
D
I
 
F
L
 
I
A
 
A
Y
 
A
S
 
A
G
 
C
L
 
A
M
 
R
E
 
A
G
 
G
K
 
L
E
 
E
V
 
V
S
 
Y
W
 
T
M
 
F
P
 
K
A
 
T
Y
 
F
G
 
P
P
 
A
E
 
E
Q
 
I
R
 
K
G
 
G
G
 
G
T
 
Y
A
 
A
N
 
M
V
 
Y
T
 
Q
V
 
V
I
 
R
V
 
A
S
 
S
D
 
S
D
 
E
K
 
K
I
 
L
S
 
Y
S
 
C
P
 
Q
I
 
-
L
 
G
S
 
D
K
 
T
Y
 
F
D
 
D
T
 
V
A
 
F
I
 
C
I
 
A
L
 
F
N
 
N
Q
 
G
P
 
E
S
 
A
L
 
Y
E
 
E
K
 
Q
F
 
N
E
 
K
S
 
D
R
 
K
V
 
I
K
 
K
P
 
P
G
 
G
G
 
T
I
 
A
L
 
F
I
 
V
Y
 
Y
D
 
D
G
 
Y
Y
 
P
G
 
G
I
 
G
I
 
D
N
 
F
P
 
E
P
 
P
T
 
D
R
 
E
-
 
I
-
 
P
K
 
E
D
 
G
I
 
V
K
 
F
V
 
A
Y
 
Y
R
 
P
I
 
I
D
 
P
A
 
M
M
 
S
D
 
Q
A
 
T
A
 
A
N
 
K
E
 
E
M
 
M
N
 
K
N
 
S
A
 
Y
K
 
R
A
 
S
F
 
K
N
|
N
M
 
M
I
 
V
V
 
A
L
 
L
G
 
G
G
 
A
L
 
L
L
 
S
Q
 
E
L
 
L
R
 
F
P
 
N
I
 
I
V
 
S
T
 
-
L
 
-
E
 
E
N
 
N
V
 
T
I
 
L
K
 
K
G
 
E
-
 
V
L
 
L
K
 
S
K
 
D
T
x
K
L
 
F
P
 
G
E
 
K
R
 
K
H
 
G
H
 
E
H
 
E
L
 
V
I
 
L
P
 
A
M
 
F
N
 
N
E
 
L
E
 
E
A
 
A
I
 
F
K
 
D
K
 
K
G
 
G
M
 
K
E
 
A
L
 
L

Sites not aligning to the query:

6n2nA Crystal structure of 2-oxoglutarate:ferredoxin oxidoreductase from magnetococcus marinus (see paper)
29% identity, 96% coverage: 5:176/180 of query aligns to 7:178/572 of 6n2nA

query
sites
6n2nA
I
 
I
I
 
R
I
 
V
A
 
A
G
 
G
F
 
E
G
 
G
G
 
G
Q
 
E
G
 
G
V
 
I
L
 
I
S
 
S
M
 
S
G
 
G
K
 
D
I
 
F
L
 
I
A
 
A
Y
 
A
S
 
A
G
 
C
L
 
A
M
 
R
E
 
A
G
 
G
K
 
L
E
 
E
V
 
V
S
 
Y
W
 
T
M
 
F
P
 
K
A
 
T
Y
 
F
G
 
P
P
 
A
E
 
E
Q
 
I
R
 
K
G
 
G
G
 
G
T
 
Y
A
 
A
N
 
M
V
 
Y
T
 
Q
V
 
V
I
 
R
V
 
A
S
 
S
D
 
S
D
 
E
K
 
K
I
 
L
S
 
Y
S
 
C
P
 
Q
I
 
-
L
 
G
S
 
D
K
 
T
Y
 
F
D
 
D
T
 
V
A
 
F
I
 
C
I
 
A
L
 
F
N
 
N
Q
 
G
P
 
E
S
 
A
L
 
Y
E
 
E
K
 
Q
F
 
N
E
 
K
S
 
D
R
 
K
V
 
I
K
 
K
P
 
P
G
 
G
G
 
T
I
 
A
L
 
F
I
 
V
Y
 
Y
D
 
D
G
 
Y
Y
 
P
G
 
G
I
 
G
I
 
D
N
 
F
P
 
E
P
 
P
T
 
D
R
 
E
-
 
I
-
 
P
K
 
E
D
 
G
I
 
V
K
 
F
V
 
A
Y
 
Y
R
 
P
I
 
I
D
 
P
A
 
M
M
 
S
D
 
Q
A
 
T
A
 
A
N
 
K
E
 
E
M
 
M
N
 
K
N
 
S
A
 
Y
K
 
R
A
 
S
F
 
K
N
 
N
M
 
M
I
 
V
V
 
A
L
 
L
G
 
G
G
 
A
L
 
L
L
 
S
Q
 
E
L
 
L
R
 
F
P
 
N
I
 
I
V
 
S
T
 
-
L
 
-
E
 
E
N
 
N
V
 
T
I
 
L
K
 
K
G
 
E
-
 
V
L
 
L
K
 
S
K
 
D
T
 
K
L
 
F
P
 
G
E
 
K
R
 
K
H
 
G
H
 
E
H
 
E
L
 
V
I
 
L
P
 
A
M
 
F
N
 
N
E
 
L
E
 
E
A
 
A
I
 
F
K
 
D
K
 
K
G
 
G
M
 
K
E
 
A
L
 
L

Sites not aligning to the query:

Query Sequence

>349857 BT0329 ketoisovalerate oxidoreductase subunit vorA (NCBI ptt file)
MKEEIIIAGFGGQGVLSMGKILAYSGLMEGKEVSWMPAYGPEQRGGTANVTVIVSDDKIS
SPILSKYDTAIILNQPSLEKFESRVKPGGILIYDGYGIINPPTRKDIKVYRIDAMDAANE
MNNAKAFNMIVLGGLLQLRPIVTLENVIKGLKKTLPERHHHLIPMNEEAIKKGMELIHEV

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory