SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 350000 FitnessBrowser__Btheta:350000 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 20 (the maximum) hits to proteins with known functional sites (download)

5u2kA Crystal structure of galactoside o-acetyltransferase complex with coa (h3 space group)
42% identity, 46% coverage: 124:240/252 of query aligns to 73:188/190 of 5u2kA

query
sites
5u2kA
W
 
W
M
 
N
L
 
V
M
 
K
I
 
L
G
 
G
K
 
K
G
 
N
S
 
V
V
 
Y
V
 
V
G
 
N
D
 
T
N
 
N
S
 
C
-
 
Y
I
 
F
L
x
M
D
 
D
A
 
G
R
 
-
R
 
-
G
 
G
G
 
Q
I
 
I
Y
 
T
I
 
I
G
 
G
E
 
D
N
 
N
V
 
V
N
 
F
I
 
I
A
 
G
S
 
P
N
 
N
V
 
C
S
 
G
L
 
F
W
x
Y
T
 
T
G
x
A
G
 
T
H
|
H
D
 
P
Y
 
L
N
 
N
D
 
F
P
 
H
Y
 
H
F
 
R
R
 
N
S
 
E
M
 
G
K
 
F
T
 
E
N
 
K
R
 
A
G
 
G
P
 
P
I
 
I
Y
 
H
I
 
I
K
 
G
N
 
S
R
 
N
V
 
T
W
 
W
I
 
F
G
 
G
P
 
G
N
 
H
V
 
V
T
 
A
I
 
V
L
|
L
H
 
P
S
 
G
V
 
V
T
 
T
I
 
I
G
 
G
E
 
E
G
 
G
A
 
S
V
 
V
I
 
I
A
 
G
A
 
A
G
 
G
A
 
S
V
 
V
V
 
V
T
|
T
K
|
K
D
 
D
I
 
I
P
 
P
P
 
P
F
 
H
T
 
S
I
 
L
C
 
A
G
 
V
G
 
G
I
 
N
P
 
P
A
 
C
K
 
K
V
 
V
L
 
V
A
 
R
Q
 
K
R
 
I
S
 
D
I
 
N
D
 
D
L
 
L

3nz2J Crystal structure of hexapeptide-repeat containing-acetyltransferase vca0836 complexed with acetyl co enzyme a from vibrio cholerae o1 biovar eltor
34% identity, 48% coverage: 114:233/252 of query aligns to 57:181/185 of 3nz2J

query
sites
3nz2J
L
 
L
Y
 
G
Y
 
H
G
 
K
S
 
S
E
 
C
I
 
V
R
 
Q
A
 
P
P
 
P
W
 
F
M
 
H
L
 
C
M
 
E
I
 
F
G
 
G
K
 
K
G
 
T
S
 
I
V
 
R
V
 
I
G
 
G
D
 
D
N
 
H
S
 
T
I
 
F
L
 
I
D
 
N
A
 
M
R
 
N
-
 
V
-
 
V
-
 
M
-
 
L
-
 
D
R
 
G
G
 
A
G
 
P
I
 
I
Y
 
T
I
 
I
G
 
G
E
 
D
N
 
H
V
 
V
N
 
L
I
 
I
A
x
G
S
 
P
N
 
S
V
 
T
S
 
Q
L
 
F
W
x
Y
T
 
T
G
 
A
G
 
S
H
|
H
D
 
S
Y
 
L
N
 
D
D
 
Y
P
 
R
Y
 
R
F
 
R
R
 
Q
S
 
A
M
 
W
K
 
E
T
 
T
N
 
I
R
 
C
G
 
K
P
 
P
I
 
I
Y
 
V
I
 
I
K
 
E
N
 
D
R
 
D
V
 
V
W
|
W
I
 
I
G
|
G
P
 
G
N
 
N
V
 
V
T
 
V
I
 
I
L
 
N
H
 
Q
S
 
G
V
 
V
T
 
T
I
 
I
G
 
G
E
 
A
G
 
R
A
 
S
V
 
V
I
 
V
A
|
A
A
|
A
G
 
N
A
 
S
V
 
V
V
 
V
T
x
N
K
 
Q
D
 
D
I
 
V
P
 
P
P
 
P
F
 
D
T
 
T
I
 
L
C
 
V
G
|
G
G
 
G
I
x
T
P
|
P
A
 
A
K
 
R
V
 
I
L
 
L

Sites not aligning to the query:

P07464 Galactoside O-acetyltransferase; GAT; Acetyl-CoA:galactoside 6-O-acetyltransferase; Thiogalactoside acetyltransferase; Thiogalactoside transacetylase; EC 2.3.1.18 from Escherichia coli (strain K12) (see 3 papers)
44% identity, 35% coverage: 147:235/252 of query aligns to 96:184/203 of P07464

query
sites
P07464
I
 
V
Y
 
T
I
 
I
G
 
G
E
 
D
N
 
N
V
 
V
N
 
L
I
 
I
A
 
A
S
 
P
N
 
N
V
 
V
S
 
T
L
 
L
W
 
S
T
 
V
G
 
T
G
 
G
H
|
H
D
 
P
Y
 
V
N
 
H
D
 
H
P
 
E
Y
 
L
F
 
R
R
 
K
S
 
N
M
 
G
K
 
E
T
 
M
N
 
Y
R
 
S
G
 
F
P
 
P
I
 
I
Y
 
T
I
 
I
K
 
G
N
 
N
R
 
N
V
 
V
W
 
W
I
 
I
G
 
G
P
x
S
N
 
H
V
 
V
T
 
V
I
 
I
L
 
N
H
 
P
S
 
G
V
 
V
T
 
T
I
 
I
G
 
G
E
 
D
G
 
N
A
 
S
V
 
V
I
 
I
A
 
G
A
|
A
G
 
G
A
 
S
V
 
I
V
 
V
T
|
T
K
|
K
D
 
D
I
 
I
P
 
P
P
 
P
F
 
N
T
 
V
I
 
V
C
 
A
G
 
A
G
 
G
I
 
V
P
 
P
A
 
C
K
x
R
V
 
V
L
 
I
A
x
R
Q
 
E

Sites not aligning to the query:

1krrA Galactoside acetyltransferase in complex with acetyl-coenzyme a (see paper)
44% identity, 35% coverage: 147:235/252 of query aligns to 95:183/200 of 1krrA

query
sites
1krrA
I
 
V
Y
 
T
I
 
I
G
 
G
E
 
D
N
 
N
V
 
V
N
 
L
I
|
I
A
|
A
S
x
P
N
 
N
V
 
V
S
 
T
L
 
L
W
 
S
T
 
V
G
x
T
G
 
G
H
|
H
D
 
P
Y
 
V
N
 
H
D
 
H
P
 
E
Y
 
L
F
 
R
R
 
K
S
 
N
M
 
G
K
 
E
T
 
M
N
 
Y
R
 
S
G
 
F
P
 
P
I
 
I
Y
 
T
I
 
I
K
 
G
N
 
N
R
 
N
V
 
V
W
 
W
I
 
I
G
|
G
P
x
S
N
 
H
V
 
V
T
 
V
I
 
I
L
x
N
H
 
P
S
 
G
V
 
V
T
 
T
I
 
I
G
 
G
E
 
D
G
 
N
A
 
S
V
 
V
I
 
I
A
x
G
A
|
A
G
 
G
A
 
S
V
 
I
V
 
V
T
 
T
K
 
K
D
 
D
I
 
I
P
 
P
P
 
P
F
 
N
T
 
V
I
 
V
C
 
A
G
x
A
G
 
G
I
 
V
P
|
P
A
 
C
K
 
R
V
 
V
L
 
I
A
x
R
Q
 
E

Sites not aligning to the query:

3nz2C Crystal structure of hexapeptide-repeat containing-acetyltransferase vca0836 complexed with acetyl co enzyme a from vibrio cholerae o1 biovar eltor
34% identity, 48% coverage: 114:233/252 of query aligns to 54:178/183 of 3nz2C

query
sites
3nz2C
L
 
L
Y
 
G
Y
 
H
G
 
K
S
 
S
E
 
C
I
 
V
R
 
Q
A
 
P
P
 
P
W
 
F
M
 
H
L
 
C
M
 
E
I
 
F
G
 
G
K
 
K
G
 
T
S
 
I
V
 
R
V
 
I
G
 
G
D
 
D
N
 
H
S
 
T
I
 
F
L
 
I
D
 
N
A
 
M
R
 
N
-
 
V
-
 
V
-
 
M
-
 
L
-
 
D
R
 
G
G
 
A
G
 
P
I
 
I
Y
 
T
I
 
I
G
 
G
E
 
D
N
 
H
V
 
V
N
 
L
I
 
I
A
 
G
S
 
P
N
 
S
V
 
T
S
 
Q
L
 
F
W
x
Y
T
 
T
G
 
A
G
 
S
H
|
H
D
 
S
Y
 
L
N
 
D
D
 
Y
P
 
R
Y
 
R
F
 
R
R
 
Q
S
 
A
M
 
W
K
 
E
T
 
T
N
 
I
R
 
C
G
 
K
P
 
P
I
 
I
Y
 
V
I
 
I
K
 
E
N
 
D
R
 
D
V
 
V
W
 
W
I
 
I
G
|
G
P
 
G
N
 
N
V
 
V
T
 
V
I
 
I
L
 
N
H
 
Q
S
 
G
V
 
V
T
 
T
I
 
I
G
 
G
E
 
A
G
 
R
A
 
S
V
 
V
I
 
V
A
|
A
A
|
A
G
x
N
A
 
S
V
 
V
V
 
V
T
x
N
K
 
Q
D
 
D
I
 
V
P
 
P
P
 
P
F
 
D
T
 
T
I
 
L
C
 
V
G
|
G
G
 
G
I
x
T
P
|
P
A
 
A
K
 
R
V
 
I
L
|
L

Sites not aligning to the query:

1krvA Galactoside acetyltransferase in complex with coa and pnp-beta-gal (see paper)
44% identity, 35% coverage: 147:235/252 of query aligns to 95:183/201 of 1krvA

query
sites
1krvA
I
 
V
Y
 
T
I
 
I
G
 
G
E
 
D
N
 
N
V
 
V
N
 
L
I
 
I
A
|
A
S
 
P
N
 
N
V
 
V
S
 
T
L
 
L
W
x
S
T
 
V
G
x
T
G
 
G
H
 
H
D
 
P
Y
 
V
N
 
H
D
 
H
P
 
E
Y
 
L
F
 
R
R
 
K
S
 
N
M
 
G
K
 
E
T
x
M
N
 
Y
R
 
S
G
 
F
P
 
P
I
 
I
Y
 
T
I
 
I
K
 
G
N
 
N
R
 
N
V
 
V
W
|
W
I
 
I
G
|
G
P
x
S
N
 
H
V
 
V
T
 
V
I
 
I
L
x
N
H
 
P
S
 
G
V
 
V
T
 
T
I
 
I
G
 
G
E
 
D
G
 
N
A
 
S
V
 
V
I
 
I
A
 
G
A
|
A
G
 
G
A
 
S
V
 
I
V
 
V
T
 
T
K
 
K
D
 
D
I
 
I
P
 
P
P
 
P
F
 
N
T
 
V
I
 
V
C
 
A
G
 
A
G
 
G
I
 
V
P
|
P
A
 
C
K
x
R
V
 
V
L
 
I
A
x
R
Q
 
E

Sites not aligning to the query:

1kruA Galactoside acetyltransferase in complex with iptg and coenzyme a (see paper)
44% identity, 35% coverage: 147:235/252 of query aligns to 95:183/201 of 1kruA

query
sites
1kruA
I
 
V
Y
 
T
I
 
I
G
 
G
E
 
D
N
 
N
V
 
V
N
x
L
I
 
I
A
 
A
S
 
P
N
 
N
V
 
V
S
 
T
L
 
L
W
 
S
T
 
V
G
 
T
G
 
G
H
|
H
D
 
P
Y
 
V
N
 
H
D
 
H
P
 
E
Y
 
L
F
 
R
R
 
K
S
 
N
M
 
G
K
 
E
T
x
M
N
 
Y
R
 
S
G
 
F
P
 
P
I
 
I
Y
 
T
I
 
I
K
 
G
N
 
N
R
 
N
V
 
V
W
|
W
I
 
I
G
|
G
P
x
S
N
 
H
V
 
V
T
 
V
I
 
I
L
 
N
H
 
P
S
 
G
V
 
V
T
 
T
I
 
I
G
 
G
E
 
D
G
 
N
A
 
S
V
 
V
I
 
I
A
x
G
A
|
A
G
 
G
A
 
S
V
 
I
V
 
V
T
 
T
K
 
K
D
 
D
I
 
I
P
 
P
P
 
P
F
 
N
T
 
V
I
 
V
C
 
A
G
 
A
G
 
G
I
 
V
P
|
P
A
 
C
K
 
R
V
 
V
L
 
I
A
x
R
Q
 
E

Sites not aligning to the query:

3ectA Crystal structure of the hexapeptide-repeat containing- acetyltransferase vca0836 from vibrio cholerae
34% identity, 48% coverage: 114:233/252 of query aligns to 47:171/176 of 3ectA

query
sites
3ectA
L
 
L
Y
 
G
Y
 
H
G
 
K
S
 
S
E
 
C
I
 
V
R
 
Q
A
 
P
P
 
P
W
 
F
M
 
H
L
 
C
M
 
E
I
 
F
G
 
G
K
 
K
G
 
T
S
 
I
V
 
R
V
 
I
G
 
G
D
 
D
N
 
H
S
 
T
I
 
F
L
 
I
D
 
N
A
 
M
R
 
N
-
 
V
-
 
V
-
 
M
-
 
L
-
 
D
R
 
G
G
 
A
G
 
P
I
 
I
Y
 
T
I
 
I
G
 
G
E
 
D
N
 
H
V
 
V
N
 
L
I
 
I
A
 
G
S
 
P
N
 
S
V
 
T
S
 
Q
L
 
F
W
 
Y
T
 
T
G
 
A
G
 
S
H
 
H
D
 
S
Y
 
L
N
 
D
D
 
Y
P
 
R
Y
 
R
F
 
R
R
 
Q
S
 
A
M
 
W
K
 
E
T
 
T
N
 
I
R
 
C
G
 
K
P
 
P
I
 
I
Y
 
V
I
 
I
K
 
E
N
 
D
R
 
D
V
 
V
W
 
W
I
 
I
G
 
G
P
 
G
N
 
N
V
 
V
T
 
V
I
 
I
L
 
N
H
 
Q
S
x
G
V
 
V
T
 
T
I
 
I
G
 
G
E
 
A
G
 
R
A
 
S
V
 
V
I
 
V
A
 
A
A
 
A
G
 
N
A
 
S
V
 
V
V
 
V
T
 
N
K
 
Q
D
|
D
I
 
V
P
 
P
P
 
P
F
 
D
T
 
T
I
 
L
C
 
V
G
 
G
G
 
G
I
 
T
P
 
P
A
 
A
K
 
R
V
 
I
L
 
L

4isxA The crystal structure of maltose o-acetyltransferase from clostridium difficile 630 in complex with acetyl-coa
44% identity, 35% coverage: 147:235/252 of query aligns to 95:183/186 of 4isxA

query
sites
4isxA
I
 
I
Y
 
E
I
 
I
G
 
G
E
 
D
N
 
N
V
 
V
N
 
M
I
 
L
A
|
A
S
 
P
N
 
N
V
 
V
S
 
Q
L
 
I
W
 
Y
T
 
T
G
 
A
G
 
Y
H
 
H
D
 
P
Y
 
I
N
 
-
D
 
D
P
 
A
Y
 
Q
F
 
L
R
 
R
S
 
N
M
 
S
K
 
G
T
 
I
N
 
E
R
 
Y
G
 
G
-
 
S
P
 
P
I
 
V
Y
 
K
I
 
I
K
 
G
N
 
D
R
 
N
V
 
V
W
|
W
I
 
I
G
|
G
P
x
G
N
 
G
V
 
V
T
 
I
I
 
I
L
 
T
H
 
P
S
 
G
V
 
I
T
 
T
I
 
I
G
 
G
E
 
D
G
 
N
A
 
V
V
 
V
I
 
I
A
 
G
A
|
A
G
 
G
A
 
S
V
 
V
V
 
V
T
 
T
K
 
K
D
 
D
I
 
I
P
 
P
P
 
P
F
 
N
T
 
T
I
 
V
C
 
A
G
x
V
G
 
G
I
 
N
P
 
P
A
 
C
K
 
R
V
 
V
L
 
I
A
x
K
Q
 
K

Sites not aligning to the query:

4husA Crystal structure of streptogramin group a antibiotic acetyltransferase vata from staphylococcus aureus in complex with virginiamycin m1 (see paper)
53% identity, 24% coverage: 180:239/252 of query aligns to 110:169/212 of 4husA

query
sites
4husA
R
 
K
G
 
G
P
 
D
I
 
I
Y
 
E
I
 
I
K
 
G
N
 
N
R
 
D
V
 
V
W
 
W
I
 
I
G
 
G
P
 
R
N
 
D
V
 
V
T
 
T
I
 
I
L
 
M
H
 
P
S
 
G
V
 
V
T
 
K
I
 
I
G
 
G
E
 
D
G
 
G
A
 
A
V
 
I
I
 
I
A
 
A
A
 
A
G
 
E
A
 
A
V
 
V
V
 
V
T
 
T
K
 
K
D
 
N
I
 
V
P
 
A
P
 
P
F
 
Y
T
 
S
I
 
I
C
 
V
G
 
G
G
 
G
I
 
N
P
 
P
A
 
L
K
 
K
V
 
F
L
 
I
A
 
R
Q
 
K
R
 
R
S
 
F
I
 
S
D
 
D

Sites not aligning to the query:

4hurA Crystal structure of streptogramin group a antibiotic acetyltransferase vata from staphylococcus aureus in complex with acetyl coenzyme a (see paper)
53% identity, 24% coverage: 180:239/252 of query aligns to 110:169/211 of 4hurA

query
sites
4hurA
R
x
K
G
 
G
P
 
D
I
 
I
Y
 
E
I
 
I
K
 
G
N
 
N
R
 
D
V
 
V
W
|
W
I
|
I
G
|
G
P
x
R
N
 
D
V
 
V
T
 
T
I
 
I
L
x
M
H
 
P
S
 
G
V
 
V
T
 
K
I
 
I
G
 
G
E
 
D
G
 
G
A
 
A
V
 
I
I
 
I
A
|
A
A
|
A
G
 
E
A
 
A
V
 
V
V
 
V
T
|
T
K
 
K
D
 
N
I
 
V
P
 
A
P
 
P
F
 
Y
T
 
S
I
 
I
C
 
V
G
|
G
G
 
G
I
 
N
P
|
P
A
 
L
K
 
K
V
 
F
L
x
I
A
x
R
Q
 
K
R
 
R
S
 
F
I
 
S
D
 
D

Sites not aligning to the query:

6x3jA Crystal structure of streptogramin a acetyltransferase vata from staphylococcus aureus in complex with streptogramin analog f0224 (46) (see paper)
53% identity, 24% coverage: 180:239/252 of query aligns to 110:169/206 of 6x3jA

query
sites
6x3jA
R
 
K
G
 
G
P
 
D
I
 
I
Y
 
E
I
 
I
K
 
G
N
 
N
R
 
D
V
 
V
W
|
W
I
 
I
G
|
G
P
 
R
N
 
D
V
 
V
T
 
T
I
 
I
L
 
M
H
 
P
S
 
G
V
 
V
T
 
K
I
 
I
G
 
G
E
 
D
G
 
G
A
 
A
V
 
I
I
 
I
A
 
A
A
 
A
G
 
E
A
 
A
V
 
V
V
 
V
T
 
T
K
 
K
D
 
N
I
 
V
P
 
A
P
 
P
F
 
Y
T
 
S
I
 
I
C
 
V
G
 
G
G
 
G
I
 
N
P
 
P
A
 
L
K
 
K
V
 
F
L
 
I
A
 
R
Q
 
K
R
 
R
S
 
F
I
 
S
D
 
D

Sites not aligning to the query:

6x3cA Crystal structure of streptogramin a acetyltransferase vata from staphylococcus aureus in complex with streptogramin analog f1037 (47) (see paper)
53% identity, 24% coverage: 180:239/252 of query aligns to 110:169/207 of 6x3cA

query
sites
6x3cA
R
 
K
G
 
G
P
 
D
I
 
I
Y
 
E
I
 
I
K
 
G
N
 
N
R
 
D
V
 
V
W
|
W
I
 
I
G
|
G
P
x
R
N
 
D
V
 
V
T
 
T
I
 
I
L
x
M
H
 
P
S
 
G
V
 
V
T
 
K
I
 
I
G
 
G
E
 
D
G
 
G
A
 
A
V
 
I
I
 
I
A
|
A
A
|
A
G
 
E
A
 
A
V
 
V
V
 
V
T
 
T
K
 
K
D
 
N
I
 
V
P
 
A
P
 
P
F
 
Y
T
 
S
I
 
I
C
 
V
G
 
G
G
 
G
I
 
N
P
 
P
A
 
L
K
 
K
V
 
F
L
 
I
A
 
R
Q
 
K
R
 
R
S
 
F
I
 
S
D
 
D

Sites not aligning to the query:

6x3cE Crystal structure of streptogramin a acetyltransferase vata from staphylococcus aureus in complex with streptogramin analog f1037 (47) (see paper)
53% identity, 24% coverage: 180:239/252 of query aligns to 110:169/203 of 6x3cE

query
sites
6x3cE
R
 
K
G
 
G
P
 
D
I
 
I
Y
 
E
I
 
I
K
 
G
N
 
N
R
 
D
V
 
V
W
|
W
I
 
I
G
|
G
P
 
R
N
 
D
V
 
V
T
 
T
I
 
I
L
 
M
H
 
P
S
 
G
V
 
V
T
 
K
I
 
I
G
 
G
E
 
D
G
 
G
A
 
A
V
 
I
I
 
I
A
|
A
A
|
A
G
 
E
A
 
A
V
 
V
V
 
V
T
 
T
K
 
K
D
 
N
I
 
V
P
 
A
P
 
P
F
 
Y
T
 
S
I
 
I
C
 
V
G
 
G
G
 
G
I
x
N
P
|
P
A
 
L
K
 
K
V
 
F
L
 
I
A
 
R
Q
 
K
R
 
R
S
 
F
I
 
S
D
 
D

Sites not aligning to the query:

3igjC Crystal structure of maltose o-acetyltransferase complexed with acetyl coenzyme a from bacillus anthracis
41% identity, 35% coverage: 147:233/252 of query aligns to 97:183/188 of 3igjC

query
sites
3igjC
I
 
V
Y
 
R
I
 
I
G
 
G
E
 
D
N
 
H
V
 
C
N
 
M
I
 
F
A
|
A
S
 
P
N
 
G
V
 
V
S
 
H
L
 
I
W
x
Y
T
 
T
G
x
A
G
 
T
H
|
H
D
 
P
Y
 
L
N
 
H
D
 
P
P
 
V
Y
 
E
F
 
R
R
 
N
S
 
S
M
 
G
K
 
K
T
 
E
N
 
Y
R
 
G
G
 
K
P
 
P
I
 
V
Y
 
K
I
 
I
K
 
G
N
 
N
R
 
N
V
 
V
W
 
W
I
 
V
G
|
G
P
 
G
N
 
G
V
 
A
T
 
I
I
 
I
L
x
N
H
 
P
S
 
G
V
 
V
T
 
S
I
 
I
G
 
G
E
 
D
G
 
N
A
 
A
V
 
V
I
 
I
A
|
A
A
x
S
G
 
G
A
 
A
V
 
V
V
 
V
T
|
T
K
 
K
D
 
D
I
 
V
P
 
P
P
 
N
F
 
N
T
 
V
I
 
V
C
 
V
G
 
G
G
 
G
I
x
N
P
 
P
A
 
A
K
 
K
V
 
V
L
 
I

Sites not aligning to the query:

4mzuF Crystal structure of fdtd, a bifunctional ketoisomerase/n- acetyltransferase from shewanella denitrificans (see paper)
34% identity, 46% coverage: 117:232/252 of query aligns to 14:140/294 of 4mzuF

query
sites
4mzuF
G
 
G
S
 
D
E
 
N
I
 
T
R
 
K
A
 
V
P
x
W
W
x
Q
M
 
F
L
 
C
M
 
V
I
 
I
G
 
L
K
 
A
G
 
G
S
 
A
V
 
V
V
 
I
G
 
G
D
 
R
N
 
N
S
 
C
I
 
N
L
 
I
D
x
C
A
 
A
R
 
N
-
 
S
-
 
L
-
 
I
R
 
E
G
 
N
G
 
D
I
 
V
Y
 
V
I
 
I
G
 
G
E
 
D
N
 
N
V
 
V
N
 
T
I
 
I
A
 
K
S
 
S
N
 
G
V
 
V
S
 
Q
L
 
I
W
 
W
T
 
D
G
 
G
G
 
I
H
 
H
D
 
I
Y
 
Q
N
 
D
D
 
D
P
 
V
Y
 
F
-
 
I
-
 
G
-
 
P
-
 
N
-
 
V
-
 
T
F
 
F
R
 
T
S
x
N
M
x
D
K
|
K
T
 
Q
N
 
P
R
 
R
G
 
S
P
 
K
I
 
I
Y
 
K
-
 
T
-
 
I
I
 
V
K
 
K
N
 
K
R
 
G
V
 
A
W
 
S
I
 
I
G
|
G
P
x
A
N
 
N
V
 
S
T
 
T
I
 
I
L
|
L
H
 
P
S
 
G
V
 
I
T
 
L
I
 
I
G
 
G
E
 
E
G
 
N
A
 
A
V
 
M
I
 
V
A
x
G
A
|
A
G
 
G
A
 
A
V
 
V
V
 
I
T
|
T
K
|
K
D
 
N
I
 
V
P
 
P
P
 
D
F
 
N
T
 
A
I
 
I
C
 
V
G
x
I
G
 
G
I
x
N
P
 
P
A
 
G
K
x
R
V
 
I

Sites not aligning to the query:

3dhoA Structure of streptogramin acetyltransferase in complex with an inhibitor
49% identity, 23% coverage: 180:236/252 of query aligns to 111:167/203 of 3dhoA

query
sites
3dhoA
R
 
K
G
 
G
P
 
D
I
 
T
Y
 
I
I
 
I
K
 
G
N
 
N
R
 
D
V
 
V
W
 
W
I
 
I
G
 
G
P
 
K
N
 
D
V
 
V
T
 
V
I
 
I
L
 
M
H
 
P
S
 
G
V
 
V
T
 
K
I
 
I
G
 
G
E
 
D
G
 
G
A
 
A
V
x
I
I
 
V
A
|
A
A
 
A
G
 
N
A
 
S
V
 
V
V
 
V
T
x
V
K
 
K
D
 
D
I
 
I
P
 
A
P
 
P
F
 
Y
T
 
M
I
x
L
C
 
A
G
|
G
G
 
G
I
 
N
P
|
P
A
 
A
K
 
N
V
 
E
L
x
I
A
 
K
Q
 
Q
R
 
R

Sites not aligning to the query:

1mrlA Crystal structure of streptogramin a acetyltransferase with dalfopristin (see paper)
49% identity, 23% coverage: 180:236/252 of query aligns to 111:167/204 of 1mrlA

query
sites
1mrlA
R
 
K
G
 
G
P
 
D
I
 
T
Y
 
I
I
 
I
K
 
G
N
 
N
R
 
D
V
 
V
W
 
W
I
 
I
G
 
G
P
 
K
N
 
D
V
 
V
T
 
V
I
 
I
L
 
M
H
 
P
S
 
G
V
 
V
T
 
K
I
 
I
G
 
G
E
 
D
G
 
G
A
 
A
V
 
I
I
 
V
A
 
A
A
 
A
G
 
N
A
 
S
V
 
V
V
 
V
T
 
V
K
 
K
D
 
D
I
 
I
P
 
A
P
 
P
F
 
Y
T
 
M
I
 
L
C
 
A
G
 
G
G
 
G
I
 
N
P
 
P
A
 
A
K
 
N
V
 
E
L
 
I
A
 
K
Q
 
Q
R
 
R

Sites not aligning to the query:

1khrA Crystal structure of vat(d) in complex with virginiamycin and coenzyme a (see paper)
49% identity, 23% coverage: 180:236/252 of query aligns to 111:167/206 of 1khrA

query
sites
1khrA
R
 
K
G
 
G
P
 
D
I
 
T
Y
 
I
I
 
I
K
 
G
N
 
N
R
 
D
V
 
V
W
|
W
I
 
I
G
 
G
P
 
K
N
 
D
V
 
V
T
 
V
I
 
I
L
 
M
H
 
P
S
 
G
V
 
V
T
 
K
I
 
I
G
 
G
E
 
D
G
 
G
A
 
A
V
 
I
I
 
V
A
|
A
A
|
A
G
 
N
A
 
S
V
 
V
V
 
V
T
x
V
K
 
K
D
 
D
I
 
I
P
 
A
P
 
P
F
 
Y
T
 
M
I
x
L
C
 
A
G
|
G
G
 
G
I
 
N
P
|
P
A
 
A
K
 
N
V
 
E
L
x
I
A
 
K
Q
 
Q
R
 
R

Sites not aligning to the query:

1kk4A Crystal structure of vat(d) in complex with acetyl-coa (see paper)
49% identity, 23% coverage: 180:236/252 of query aligns to 111:167/205 of 1kk4A

query
sites
1kk4A
R
x
K
G
 
G
P
 
D
I
 
T
Y
 
I
I
 
I
K
 
G
N
 
N
R
 
D
V
 
V
W
|
W
I
 
I
G
|
G
P
x
K
N
 
D
V
 
V
T
 
V
I
 
I
L
 
M
H
 
P
S
 
G
V
 
V
T
 
K
I
 
I
G
 
G
E
 
D
G
 
G
A
 
A
V
 
I
I
 
V
A
|
A
A
|
A
G
 
N
A
 
S
V
 
V
V
 
V
T
x
V
K
|
K
D
 
D
I
 
I
P
 
A
P
 
P
F
 
Y
T
 
M
I
x
L
C
 
A
G
|
G
G
|
G
I
 
N
P
|
P
A
 
A
K
 
N
V
 
E
L
x
I
A
 
K
Q
 
Q
R
 
R

Sites not aligning to the query:

Query Sequence

>350000 FitnessBrowser__Btheta:350000
MNLSVVLFILIVVFIKYWLLLFTSPLLMAYCWLHRRKNMANPEGEVSEIRDSGITSSSCS
KKLFKRIDKRGLINIVDGYFRWMIKIISDIPSHHIRDFFYKYIFLVKMEKNSVLYYGSEI
RAPWMLMIGKGSVVGDNSILDARRGGIYIGENVNIASNVSLWTGGHDYNDPYFRSMKTNR
GPIYIKNRVWIGPNVTILHSVTIGEGAVIAAGAVVTKDIPPFTICGGIPAKVLAQRSIDL
RYTLGGTYLHFL

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SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory