Comparing 350801 FitnessBrowser__Btheta:350801 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 8 hits to proteins with known functional sites (download)
4c20B L-fucose isomerase (see paper)
67% identity, 100% coverage: 3:591/591 of query aligns to 20:605/605 of 4c20B
4c22A L-fucose isomerase in complex with fuculose (see paper)
67% identity, 100% coverage: 3:591/591 of query aligns to 2:587/587 of 4c22A
4c21A L-fucose isomerase in complex with fucitol (see paper)
67% identity, 100% coverage: 3:591/591 of query aligns to 2:587/587 of 4c21A
3a9tA X-ray structure of bacillus pallidus d-arabinose isomerase complex with l-fucitol (see paper)
69% identity, 98% coverage: 5:583/591 of query aligns to 11:586/589 of 3a9tA
3a9sA X-ray structure of bacillus pallidus d-arabinose isomerase complex with glycerol (see paper)
69% identity, 98% coverage: 5:583/591 of query aligns to 11:586/589 of 3a9sA
3a9rA X-ray structures of bacillus pallidus d-arabinose isomerasecomplex with (4r)-2-methylpentane-2,4-diol (see paper)
69% identity, 98% coverage: 5:583/591 of query aligns to 11:586/589 of 3a9rA
1fuiA L-fucose isomerase from escherichia coli (see paper)
63% identity, 100% coverage: 1:591/591 of query aligns to 1:590/591 of 1fuiA
P69922 L-fucose isomerase; FucIase; FucIso; 6-deoxy-L-galactose isomerase; D-arabinose isomerase; EC 5.3.1.25; EC 5.3.1.3 from Escherichia coli (strain K12) (see paper)
63% identity, 100% coverage: 1:591/591 of query aligns to 1:590/591 of P69922
>350801 FitnessBrowser__Btheta:350801
MKKYPKIGIRPTIDGRQGGVRESLEEKTMNLAKAVAELISNNLKNGDGSPVECIIADNTI
GRVAESAACAEKFEREGVGSTITVTSCWCYGAETMDMNPHYPKAVWGFNGTERPGAVYLA
AVLAGHAQKGLPAFGIYGRDVQDLDDNTIPEDVAEKILRFARAAQAVATMRGKSYLSMGS
VSMGIAGSIVNPDFFQEYLGMRNESIDLTEIIRRMEEGIYDHEEYAKAMAWTEKYCKVNE
GEDFKNRPEKRKKREQKDADWEFVVKMMIIMRDLMTGNPKLKEMGFKEEALGHNAIAAGF
QGQRQWTDFYPNGDYPEALLNTSFDWNGIREAFVVATENDACNGVAMLFGHLLTNRAQIF
SDVRTYWSPEAVKRVTGKELTGLAANGIIHLINSGATTLDGSGQSLDAEGNPVMKEPWNL
TDADVENCLKATTWYPADRDYFRGGGFSSNFLSKGGMPVTMMRLNLIKGLGPVLQIAEGW
TVEIDPEIHQKLNMRTDPTWPTTWFVPRLCDKSAFKDVYSVMNNWGANHGAISYGHIGQD
LITLASMLRIPVCMHNVDENEIFRPTAWNAFGMDKEGADYRACTTYGPIYK
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory