Comparing 351002 FitnessBrowser__Btheta:351002 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 5 hits to proteins with known functional sites (download)
7qyrD Crystal structure of rimk from pseudomonas aeruginosa pao1 (see paper)
23% identity, 45% coverage: 241:459/488 of query aligns to 58:268/293 of 7qyrD
Sites not aligning to the query:
4iwxA Rimk structure at 2.85a (see paper)
23% identity, 46% coverage: 237:459/488 of query aligns to 56:270/294 of 4iwxA
5zctH The crystal structure of the poly-alpha-l-glutamate peptides synthetase rimk at 2.05 angstrom resolution. (see paper)
23% identity, 46% coverage: 237:459/488 of query aligns to 54:268/292 of 5zctH
5zctA The crystal structure of the poly-alpha-l-glutamate peptides synthetase rimk at 2.05 angstrom resolution. (see paper)
23% identity, 46% coverage: 237:459/488 of query aligns to 54:268/292 of 5zctA
Q4JAP9 Alpha-aminoadipate--LysW ligase LysX; AAA--LysW ligase LysX; EC 6.3.2.43 from Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) (see paper)
22% identity, 45% coverage: 239:456/488 of query aligns to 40:249/276 of Q4JAP9
Sites not aligning to the query:
>351002 FitnessBrowser__Btheta:351002
MNNVLILLDNPDDWKPYCETKSILTVSDYLKNKPVEKDRKLVINLSNDYSYNSEGYYCSL
LAQTRGQRVIPDVDIINKLETGTGIRMDRSLQALCYQWIQKNGIKSDIWYLNIYFGKCRE
KGLERVARFIFENYPCPLLRVALNTHPKNQIESIQFLPLNRLDDEEQDFFANTLDNFNKK
IWRAPKSAKAPRYSLAVLIDPKEKFPPSNKGALHKLSEVAKKMNIHVEMITEDDAMRLLE
FDALFIRTTTSLNHYTFHLSQLAAQNGMVVIDDPLSIIRCTNKVYLKELFEKERIPAPKS
TLIFQSNENSFEQISEQVGAPFILKIPDGSYSIGMKKVSNEEELKTSLELLFEKSAILLA
QAFTPTEFDWRVGLLNGVPLYACKYYMAKGHWQIYCHYDSGRSRCGLVDTIPIYQVPRVV
LDTAIKAANLIGKGLYGVDLKMVDDKAYVIEINDNPSIDHELEDAIIGDEMYYRLLNHFE
QALEMKHY
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory