Comparing 351063 FitnessBrowser__Btheta:351063 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
5xu1B Structure of a non-canonical abc transporter from streptococcus pneumoniae r6 (see paper)
52% identity, 98% coverage: 1:217/221 of query aligns to 3:218/226 of 5xu1B
1f3oA Crystal structure of mj0796 atp-binding cassette (see paper)
52% identity, 98% coverage: 1:217/221 of query aligns to 1:221/232 of 1f3oA
1l2tA Dimeric structure of mj0796, a bacterial abc transporter cassette (see paper)
52% identity, 98% coverage: 1:217/221 of query aligns to 1:221/230 of 1l2tA
5lilA Structure of aggregatibacter actinomycetemcomitans macb bound to atpys (p21) (see paper)
44% identity, 98% coverage: 1:217/221 of query aligns to 3:218/615 of 5lilA
5lj7A Structure of aggregatibacter actinomycetemcomitans macb bound to atp (p21) (see paper)
44% identity, 98% coverage: 1:217/221 of query aligns to 3:218/592 of 5lj7A
5ws4A Crystal structure of tripartite-type abc transporter macb from acinetobacter baumannii (see paper)
43% identity, 98% coverage: 1:217/221 of query aligns to 4:219/650 of 5ws4A
P75957 Lipoprotein-releasing system ATP-binding protein LolD; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
42% identity, 99% coverage: 1:218/221 of query aligns to 5:222/233 of P75957
7mdyC Lolcde nucleotide-bound
42% identity, 99% coverage: 1:218/221 of query aligns to 2:219/226 of 7mdyC
7arlD Lolcde in complex with lipoprotein and adp (see paper)
42% identity, 99% coverage: 1:218/221 of query aligns to 2:219/222 of 7arlD
7v8iD Lolcd(e171q)e with bound amppnp in nanodiscs (see paper)
42% identity, 99% coverage: 1:218/221 of query aligns to 4:221/229 of 7v8iD
P75831 Macrolide export ATP-binding/permease protein MacB; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
41% identity, 100% coverage: 1:221/221 of query aligns to 4:223/648 of P75831
2pclA Crystal structure of abc transporter with complex (aq_297) from aquifex aeolicus vf5
45% identity, 97% coverage: 6:220/221 of query aligns to 8:217/223 of 2pclA
8g4cB Bceabs atpgs high res tm (see paper)
42% identity, 90% coverage: 21:218/221 of query aligns to 23:220/248 of 8g4cB
Sites not aligning to the query:
7tchB Bceab e169q variant atp-bound conformation (see paper)
42% identity, 90% coverage: 21:218/221 of query aligns to 22:219/245 of 7tchB
Sites not aligning to the query:
A5U7B7 Cell division ATP-binding protein FtsE from Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) (see 2 papers)
40% identity, 91% coverage: 1:201/221 of query aligns to 1:197/229 of A5U7B7
8iddA Cryo-em structure of mycobacterium tuberculosis atp bound ftsex/ripc complex in peptidisc (see paper)
40% identity, 91% coverage: 1:201/221 of query aligns to 2:198/225 of 8iddA
8igqA Cryo-em structure of mycobacterium tuberculosis adp bound ftsex/ripc complex in peptidisc (see paper)
40% identity, 91% coverage: 1:201/221 of query aligns to 2:198/227 of 8igqA
7w78A Heme exporter hrtba in complex with mg-amppnp (see paper)
41% identity, 100% coverage: 1:221/221 of query aligns to 4:217/218 of 7w78A
7w79A Heme exporter hrtba in complex with mn-amppnp (see paper)
40% identity, 100% coverage: 1:220/221 of query aligns to 4:216/216 of 7w79A
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
37% identity, 96% coverage: 1:212/221 of query aligns to 1:211/343 of P30750
Sites not aligning to the query:
>351063 FitnessBrowser__Btheta:351063
MITLTSLSKIYRTDEIETVALENVNLTVDRGEFLSIMGPSGCGKSTLLNIMGLLDAPTTG
TVEINGTHTEGMKDKQLAAFRNKTLGFVFQSFHLINSLNVMDNVELPLLYRRIGSGERKR
LAKEVLEKVGLSHRMNHFPTQLSGGQCQRVTIARAIIGHPEIILADEPTGNLDSKMGAEV
MELLHRLNKEDGRTIVMVTHNEEQAKQTSRTIRFFDGRQVQ
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory