Comparing 352921 FitnessBrowser__Btheta:352921 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3nzqA Crystal structure of biosynthetic arginine decarboxylase adc (spea) from escherichia coli, northeast structural genomics consortium target er600 (see paper)
45% identity, 98% coverage: 13:630/630 of query aligns to 6:623/628 of 3nzqA
3n2oB X-ray crystal structure of arginine decarboxylase complexed with arginine from vibrio vulnificus (see paper)
44% identity, 98% coverage: 13:630/630 of query aligns to 8:628/629 of 3n2oB
3n2oA X-ray crystal structure of arginine decarboxylase complexed with arginine from vibrio vulnificus (see paper)
44% identity, 98% coverage: 13:630/630 of query aligns to 9:629/630 of 3n2oA
Q9SI64 Arginine decarboxylase 1, chloroplastic; ADC 1; ADC-O; ARGDC 1; AtADC1; EC 4.1.1.19 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
35% identity, 94% coverage: 4:595/630 of query aligns to 34:623/702 of Q9SI64
3nzpB Crystal structure of the biosynthetic arginine decarboxylase spea from campylobacter jejuni, northeast structural genomics consortium target br53 (see paper)
37% identity, 93% coverage: 13:601/630 of query aligns to 4:553/591 of 3nzpB
Sites not aligning to the query:
4xg1B Psychromonas ingrahamii diaminopimelate decarboxylase with llp
30% identity, 43% coverage: 81:351/630 of query aligns to 42:289/418 of 4xg1B
Sites not aligning to the query:
3c5qA Crystal structure of diaminopimelate decarboxylase (i148l mutant) from helicobacter pylori complexed with l-lysine
29% identity, 30% coverage: 167:352/630 of query aligns to 104:274/394 of 3c5qA
Sites not aligning to the query:
B4XMC6 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori (Campylobacter pylori) (see paper)
29% identity, 30% coverage: 167:352/630 of query aligns to 106:276/405 of B4XMC6
Sites not aligning to the query:
Q58497 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii) (see paper)
25% identity, 58% coverage: 78:445/630 of query aligns to 54:368/438 of Q58497
Sites not aligning to the query:
1twiA Crystal structure of diaminopimelate decarboxylase from m. Jannaschii in co-complex with l-lysine (see paper)
25% identity, 58% coverage: 78:445/630 of query aligns to 50:364/434 of 1twiA
Sites not aligning to the query:
1tufA Crystal structure of diaminopimelate decarboxylase from m. Jannaschi (see paper)
25% identity, 58% coverage: 78:445/630 of query aligns to 50:364/434 of 1tufA
4xg1A Psychromonas ingrahamii diaminopimelate decarboxylase with llp
27% identity, 48% coverage: 84:384/630 of query aligns to 40:295/393 of 4xg1A
Sites not aligning to the query:
7ru7A Crystal structure of btrk, a decarboxylase involved in butirosin biosynthesis
25% identity, 38% coverage: 115:352/630 of query aligns to 61:286/412 of 7ru7A
Sites not aligning to the query:
6n2aA Meso-diaminopimelate decarboxylase from arabidopsis thaliana (isoform 1)
27% identity, 45% coverage: 71:356/630 of query aligns to 39:299/422 of 6n2aA
Sites not aligning to the query:
5x7mA Crystal structure of meso-diaminopimelate decarboxylase (dapdc) from corynebacterium glutamicum (see paper)
30% identity, 19% coverage: 243:363/630 of query aligns to 211:325/443 of 5x7mA
Sites not aligning to the query:
5x7nA Crystal structure of meso-diaminopimelate decarboxylase (dapdc) from corynebacterium glutamicum (see paper)
30% identity, 19% coverage: 243:363/630 of query aligns to 211:325/442 of 5x7nA
Sites not aligning to the query:
2nv9B The x-ray crystal structure of the paramecium bursaria chlorella virus arginine decarboxylase (see paper)
22% identity, 46% coverage: 65:352/630 of query aligns to 24:269/372 of 2nv9B
Sites not aligning to the query:
7kh2D Structure of n-citrylornithine decarboxylase bound with plp (see paper)
22% identity, 47% coverage: 57:354/630 of query aligns to 28:304/415 of 7kh2D
Sites not aligning to the query:
P9WIU7 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 2 papers)
24% identity, 29% coverage: 169:351/630 of query aligns to 134:316/447 of P9WIU7
Sites not aligning to the query:
1hkvA Mycobacterium diaminopimelate dicarboxylase (lysa) (see paper)
24% identity, 29% coverage: 169:351/630 of query aligns to 133:315/446 of 1hkvA
Sites not aligning to the query:
>352921 FitnessBrowser__Btheta:352921
MRKWRIEDSEELYNITGWGTSYFSINDAGHVVVTPRRDGVTVDLKELVDELQLRDVASPM
LLRFPDILDNRIEKMSSCFKQAAEEYGYKAENFIIYPIKVNQMRPVVEEIISHGKKFNLG
LEAGSKPELHAVIAVNTDSDSLIVCNGYKDESYIELALLAQKMGKRIFLVVEKMNELKLI
AKMAKQLNVQPNIGIRIKLASSGSGKWEESGGDASKFGLTSSELLEALDFMESKGLKDCL
KLIHFHIGSQVTKIRRIKTALREASQFYVQLHSMGFNVEFVDIGGGLGVDYDGTRSSNSE
GSVNYSIQEYVNDSISTLVDVSDKNGIPHPNIITESGRALTAHHSVLIFEVLETATLPEW
DDEEEIAPDAHELVQELYSIWDSLNQNKMLEAWHDAQQIREEALDLFSHGIVDLKTRAQI
ERLYWSITREINQIAGGLKHAPDEFRGLSKLLADKYFCNFSLFQSLPDSWAIDQIFPIMP
IQRLDEKPERSATLQDITCDSDGKIANFISTRNVAHYLPVHSLKKTEPYYLAVFLVGAYQ
EILGDMHNLFGDTNAVHVSVNEKGYNIEQIIDGETVAEVLDYVQYNPKKLVRTLETWVTK
SVKEGKISLEEGKEFLSNYRSGLYGYTYLE
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory