Comparing 353142 FitnessBrowser__Btheta:353142 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 1 hits to proteins with known functional sites (download)
P11551 L-fucose-proton symporter; 6-deoxy-L-galactose permease; L-fucose permease; L-fucose-H(+) symport protein from Escherichia coli (strain K12) (see 3 papers)
39% identity, 96% coverage: 2:404/418 of query aligns to 20:423/438 of P11551
Sites not aligning to the query:
>353142 FitnessBrowser__Btheta:353142
MKKNTYTIPLALVFSLFFLWAISSNLLPTMIRQLMKTCELNTFEASFTETAYWLAYFIFP
IPIAMFMKRYSYKAGIIFGLLLAAVGGLLFFPAAMLKEYWAYLCIFFIIATGMCFLETAA
NPYVTVLGAPETAPRRLNLAQSFNGLGAFIAAMFLSKLILSGTHYTRETLPVDYPGGWQA
YIQLETDAMKLPYLILALLLLAIAVVFVFSKLPKIGDEGAEPASGKKEKLIDFDVLKRSH
LRWGVIAQFFYNGGQTAINSLFLVYCCTYAGLPEDTATTFFGLYMLAFLLGRWIGTGLMV
KFRPQGMLLVYALMNILLCGVVMLWGGMIGLYAMLAISFFMSIMYPTQFSLALKGLGNQT
KSGSAFLVMAIVGNACLPQLTAYFMHVNEHIYYVAYGIPMICFAFCAYYGWKGYKVID
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory