Comparing 353290 FitnessBrowser__Btheta:353290 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 4 hits to proteins with known functional sites (download)
P32170 L-rhamnose isomerase; RhamIso; EC 5.3.1.14 from Escherichia coli (strain K12) (see paper)
54% identity, 99% coverage: 7:418/418 of query aligns to 5:418/419 of P32170
1de5A L-rhamnose isomerase (see paper)
54% identity, 99% coverage: 7:418/418 of query aligns to 4:417/417 of 1de5A
1de6A L-rhamnose isomerase (see paper)
54% identity, 99% coverage: 7:418/418 of query aligns to 3:416/416 of 1de6A
3uvaC Crystal structure of l-rhamnose isomerase mutant w38f from bacillus halodurans in complex with mn (see paper)
49% identity, 99% coverage: 7:418/418 of query aligns to 2:405/405 of 3uvaC
>353290 FitnessBrowser__Btheta:353290
MKKEEMIQKAYEIAVERYAAVGVDTEKVLKTMQDFHLSLHCWQADDVTGFEVQAGALSGG
IQATGNYPGKARNIDELRADILKAASYIPGTHRLNLHEIYGDFQGKVVDRDQVEPEHFKS
WIEWGKEHNMKLDFNSTSFSHPKSGDLSLSNPDEGIRQFWIEHTKRCRAVAEEMGKAQGD
PCIMNLWVHDGSKDITVNRMKYRALLKDSLDQIFATEYKNMKDCIESKVFGIGLESYTVG
SNDFYIGYGASRNKMVTLDTGHFHPTESVADKVSSLLLYVPELMLHVSRPVRWDSDHVTI
MDDPTMELFSEIVRCGALERVHYGLDYFDASINRIGAYVIGSRAAQKCMTRALLEPIAKL
REYEANGQGFQRLALLEEEKALPWNAVWDMFCLKNNVPVGEDFIAEIEKYEAEVTSKR
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory