Comparing 353365 FitnessBrowser__Btheta:353365 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
6z5uK Cryo-em structure of the a. Baumannii mlabdef complex bound to appnhp (see paper)
36% identity, 94% coverage: 1:240/256 of query aligns to 2:241/253 of 6z5uK
7d0aB Acinetobacter mlafedb complex in adp-vanadate trapped vclose conformation (see paper)
36% identity, 94% coverage: 1:240/256 of query aligns to 4:243/263 of 7d0aB
7d08B Acinetobacter mlafedb complex in atp-bound vtrans1 conformation (see paper)
36% identity, 94% coverage: 1:240/256 of query aligns to 4:243/263 of 7d08B
Q9AT00 Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic; ABC transporter I family member 13; ABC transporter ABCI.13; AtABCI13; Non-intrinsic ABC protein 11; AtNAP11 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
35% identity, 94% coverage: 1:240/256 of query aligns to 84:338/345 of Q9AT00
7chaI Cryo-em structure of p.Aeruginosa mlafebd with amppnp (see paper)
35% identity, 92% coverage: 2:237/256 of query aligns to 4:239/262 of 7chaI
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
36% identity, 93% coverage: 1:237/256 of query aligns to 2:236/241 of 4u00A
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
35% identity, 95% coverage: 1:242/256 of query aligns to 1:245/343 of P30750
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
35% identity, 95% coverage: 1:242/256 of query aligns to 2:246/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
35% identity, 95% coverage: 1:242/256 of query aligns to 2:246/344 of 3tuiC
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
35% identity, 95% coverage: 1:242/256 of query aligns to 2:246/344 of 6cvlD
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
34% identity, 93% coverage: 1:237/256 of query aligns to 1:236/240 of 4ymuJ
3c4jA Abc protein artp in complex with atp-gamma-s
34% identity, 93% coverage: 1:237/256 of query aligns to 3:238/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
34% identity, 93% coverage: 1:237/256 of query aligns to 3:238/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
34% identity, 93% coverage: 1:237/256 of query aligns to 3:238/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
34% identity, 93% coverage: 1:237/256 of query aligns to 3:238/242 of 2oljA
7ch8I Cryo-em structure of p.Aeruginosa mlafebd with adp-v (see paper)
33% identity, 92% coverage: 2:237/256 of query aligns to 4:236/259 of 7ch8I
7ch6C Cryo-em structure of e.Coli mlafeb with amppnp (see paper)
34% identity, 93% coverage: 1:237/256 of query aligns to 4:240/265 of 7ch6C
6xgyA Crystal structure of e. Coli mlafb abc transport subunits in the dimeric state (see paper)
34% identity, 93% coverage: 1:237/256 of query aligns to 4:240/264 of 6xgyA
7cgnB The overall structure of the mlafedb complex in atp-bound eqtall conformation (mutation of e170q on mlaf) (see paper)
34% identity, 93% coverage: 1:237/256 of query aligns to 4:240/263 of 7cgnB
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
33% identity, 86% coverage: 19:237/256 of query aligns to 44:263/382 of 7ahhC
Sites not aligning to the query:
>353365 FitnessBrowser__Btheta:353365
MIDIRGLYKSFEDKTVLSNINASFENGKTNLIIGQSGSGKTVLMKCIVGLLTPEKGEVLY
DGRNLVLMGKKEKKMLRKEMGMIFQSAALFDSMSVLDNVMFPLNMFSNDTLRDRTKRAMF
CLERVNLTEAKDKFPGEISGGMQKRVAIARAIALNPQYLFCDEPNSGLDPKTSLVIDDLI
HDITQEYNMTTIINTHDMNSVLGIGEKVIYIYEGHKEWEGTKDDIFTSTNERLNNFIFAS
DLLRKVKDMEVQNMEG
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory