SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 353703 FitnessBrowser__Btheta:353703 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 5 hits to proteins with known functional sites (download)

2qlxA Crystal structure of rhamnose mutarotase rhau of rhizobium leguminosarum in complex with l-rhamnose (see paper)
51% identity, 99% coverage: 1:103/104 of query aligns to 5:107/108 of 2qlxA

query
sites
2qlxA
M
 
L
K
 
E
R
 
K
E
 
H
A
 
A
F
 
F
K
 
K
M
|
M
Y
 
Q
L
 
L
K
 
N
P
 
P
G
 
G
Y
 
M
E
 
E
A
 
A
E
 
E
Y
|
Y
E
 
R
K
 
K
R
 
R
H
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H
A
 
D
A
 
E
I
 
I
W
 
W
P
 
P
E
 
E
L
 
L
K
 
V
A
 
D
L
 
L
L
 
L
S
 
H
K
 
Q
N
 
S
G
 
G
V
 
A
S
 
S
D
 
D
Y
|
Y
S
 
S
I
 
I
Y
 
H
W
 
L
D
 
D
K
 
R
E
 
E
T
 
T
N
 
N
I
 
T
L
 
L
F
 
F
A
 
G
F
 
V
Q
 
L
K
 
T
T
 
R
E
 
P
G
 
K
E
 
D
G
 
H
G
 
T
S
 
M
Q
 
A
D
 
S
L
 
L
G
 
P
N
 
D
T
 
H
E
 
P
I
 
V
V
 
M
Q
 
K
K
 
K
W
|
W
W
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W
D
 
A
Y
 
H
M
 
M
A
 
A
D
 
D
I
 
I
M
 
M
E
 
A
V
 
T
N
 
N
P
 
P
D
 
D
N
 
N
S
 
S
P
 
P
V
 
V
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Q
I
 
S
P
 
D
L
 
L
P
 
V
E
 
T
V
 
L
F
 
F
H
 
H
M
 
M

2qlwB Crystal structure of rhamnose mutarotase rhau of rhizobium leguminosarum (see paper)
51% identity, 99% coverage: 1:103/104 of query aligns to 5:107/108 of 2qlwB

query
sites
2qlwB
M
 
L
K
 
E
R
 
K
E
 
H
A
 
A
F
 
F
K
 
K
M
 
M
Y
 
Q
L
 
L
K
 
N
P
 
P
G
 
G
Y
 
M
E
 
E
A
 
A
E
 
E
Y
 
Y
E
 
R
K
 
K
R
 
R
H
 
H
A
 
D
A
 
E
I
 
I
W
 
W
P
 
P
E
 
E
L
 
L
K
 
V
A
 
D
L
 
L
L
 
L
S
 
H
K
 
Q
N
 
S
G
 
G
V
 
A
S
 
S
D
 
D
Y
 
Y
S
 
S
I
 
I
Y
 
H
W
 
L
D
 
D
K
 
R
E
 
E
T
 
T
N
 
N
I
 
T
L
 
L
F
 
F
A
 
G
F
 
V
Q
 
L
K
 
T
T
 
R
E
 
P
G
 
K
E
 
D
G
 
H
G
 
T
S
 
M
Q
 
A
D
 
S
L
 
L
G
 
P
N
 
D
T
 
H
E
 
P
I
 
V
V
 
M
Q
 
K
K
 
K
W
 
W
W
 
W
D
 
A
Y
 
H
M
 
M
A
|
A
D
 
D
I
 
I
M
|
M
E
 
A
V
x
T
N
 
N
P
 
P
D
 
D
N
 
N
S
 
S
P
 
P
V
 
V
S
 
Q
I
 
S
P
 
D
L
 
L
P
 
V
E
 
T
V
 
L
F
 
F
H
 
H
M
 
M

1x8dA Crystal structure of e. Coli yiil protein containing l-rhamnose (see paper)
48% identity, 99% coverage: 1:103/104 of query aligns to 1:103/104 of 1x8dA

query
sites
1x8dA
M
 
M
K
 
I
R
 
R
E
 
K
A
 
A
F
 
F
K
 
V
M
 
M
Y
 
Q
L
 
V
K
 
N
P
 
P
G
 
D
Y
 
A
E
 
H
A
 
E
E
 
E
Y
|
Y
E
 
Q
K
 
R
R
 
R
H
|
H
A
 
N
A
 
P
I
 
I
W
 
W
P
 
P
E
 
E
L
 
L
K
 
E
A
 
A
L
 
V
L
 
L
S
 
K
K
 
S
N
 
H
G
 
G
V
 
A
S
 
H
D
 
N
Y
|
Y
S
 
A
I
 
I
Y
 
Y
W
 
L
D
 
D
K
 
K
E
 
A
T
 
R
N
 
N
I
 
L
L
 
L
F
 
F
A
 
A
F
 
M
Q
 
V
K
 
E
T
 
I
E
 
E
G
 
S
E
 
E
G
 
E
G
 
R
S
 
W
Q
 
N
D
 
A
L
 
V
G
 
A
N
 
S
T
 
T
E
 
D
I
 
V
V
 
C
Q
 
Q
K
 
R
W
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W
W
|
W
D
 
K
Y
 
Y
M
 
M
A
 
T
D
 
D
I
 
V
M
 
M
E
 
P
V
 
A
N
 
N
P
 
P
D
 
D
N
 
N
S
 
S
P
 
P
V
 
V
S
 
S
I
 
S
P
 
E
L
 
L
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Q
E
 
E
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V
F
 
F
H
 
Y
M
 
L

P32156 L-rhamnose mutarotase; Rhamnose 1-epimerase; Type-3 mutarotase; EC 5.1.3.32 from Escherichia coli (strain K12) (see paper)
48% identity, 99% coverage: 1:103/104 of query aligns to 1:103/104 of P32156

query
sites
P32156
M
 
M
K
 
I
R
 
R
E
 
K
A
 
A
F
 
F
K
 
V
M
 
M
Y
 
Q
L
 
V
K
 
N
P
 
P
G
 
D
Y
 
A
E
 
H
A
 
E
E
 
E
Y
|
Y
E
 
Q
K
 
R
R
 
R
H
 
H
A
 
N
A
 
P
I
 
I
W
 
W
P
 
P
E
 
E
L
 
L
K
 
E
A
 
A
L
 
V
L
 
L
S
 
K
K
 
S
N
 
H
G
 
G
V
 
A
S
 
H
D
 
N
Y
 
Y
S
 
A
I
 
I
Y
 
Y
W
 
L
D
 
D
K
 
K
E
 
A
T
 
R
N
 
N
I
 
L
L
 
L
F
 
F
A
 
A
F
 
M
Q
 
V
K
 
E
T
 
I
E
 
E
G
 
S
E
 
E
G
 
E
G
 
R
S
 
W
Q
 
N
D
 
A
L
 
V
G
 
A
N
 
S
T
 
T
E
 
D
I
 
V
V
 
C
Q
 
Q
K
 
R
W
 
W
W
 
W
D
 
K
Y
 
Y
M
 
M
A
 
T
D
 
D
I
 
V
M
 
M
E
 
P
V
 
A
N
 
N
P
 
P
D
 
D
N
 
N
S
 
S
P
 
P
V
 
V
S
 
S
I
 
S
P
 
E
L
 
L
P
 
Q
E
 
E
V
 
V
F
 
F
H
 
Y
M
 
L

7bywA Crystal structure of acidovorax avenae l-fucose mutarotase (l-fucose- bound form) (see paper)
28% identity, 99% coverage: 2:104/104 of query aligns to 1:108/108 of 7bywA

query
sites
7bywA
K
 
Q
R
 
R
E
 
M
A
 
G
F
 
M
K
 
V
M
 
I
Y
 
G
L
 
I
K
 
K
P
 
P
G
 
E
Y
 
H
E
 
I
A
 
D
E
 
E
Y
|
Y
E
 
K
K
 
R
R
 
L
H
|
H
A
 
A
A
 
A
I
 
V
W
 
W
P
 
P
E
 
A
L
 
V
K
 
L
A
 
A
L
 
R
L
 
L
S
 
A
K
 
E
N
 
A
G
 
H
V
 
V
S
 
R
D
 
N
Y
|
Y
S
 
S
I
 
I
Y
 
F
W
 
L
D
 
R
K
 
E
E
 
P
T
 
E
N
 
N
I
 
L
L
 
L
F
 
F
A
 
G
F
 
Y
Q
 
W
K
 
E
T
 
Y
E
 
H
G
 
G
E
 
T
G
 
D
G
 
Y
S
 
A
Q
 
A
D
 
D
L
 
M
-
 
E
-
 
A
-
 
I
G
 
A
N
 
Q
T
 
D
E
 
P
I
 
E
V
 
T
Q
 
R
K
 
R
W
|
W
W
|
W
D
 
T
Y
 
F
M
 
C
A
 
G
D
 
P
I
 
C
M
 
Q
E
 
E
V
 
P
N
 
L
P
 
A
D
 
S
N
 
R
S
 
Q
P
 
P
V
 
G
S
 
E
-
 
H
-
 
W
I
 
A
P
 
H
L
 
M
P
 
E
E
 
E
V
 
V
F
 
F
H
 
H
M
 
V
D
 
D

Query Sequence

>353703 FitnessBrowser__Btheta:353703
MKREAFKMYLKPGYEAEYEKRHAAIWPELKALLSKNGVSDYSIYWDKETNILFAFQKTEG
EGGSQDLGNTEIVQKWWDYMADIMEVNPDNSPVSIPLPEVFHMD

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory