Comparing 354204 FitnessBrowser__Btheta:354204 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
4rqoB Crystal structure of l-serine dehydratase from legionella pneumophila (see paper)
42% identity, 96% coverage: 12:405/411 of query aligns to 4:442/448 of 4rqoB
Sites not aligning to the query:
2iafA Crystal structure of a fragment (residues 11 to 161) of l-serine dehydratase from legionella pneumophila
35% identity, 25% coverage: 25:126/411 of query aligns to 1:137/140 of 2iafA
>354204 FitnessBrowser__Btheta:354204
MVLTKAHPSMKSIKELYRIGTGPSSSHTMGPRKAAEMFVERHPDAASFKVTLYGSLAATG
KGHMTDVAIIDTLQPAAPVEIVWQPKVFLPFHPNGMTFAALDADNKILENWTVYSIGGGA
LAENNDNPTIESPEVYGMNNMTEILQWCERTGKSYWEYVKECENEDIWDYLAEVWDTMKD
AIHRGLEAEGVLPGPLNLRRKASTYYIRATGYKQSLQSRGLVFSYALAVSEENASGGKIV
TAPTCGSCGVMPAVLYHLQKSRDFSDMRILRALATAGLIGNIVKFNASISGAEVGCQGEV
GVACAMASAAANQLFGGSPAQIEYAAEMGLEHHLGMTCDPVCGLVQIPCIERNAYAAARA
LDANLYSAFTDGMHRVSFDKVVQVMKQTGHDLPSLYKETSEGGLAKDYQQM
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory