SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 3606958 FitnessBrowser__Dino:3606958 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

2q7sB Crystal structure of n-formylglutamate amidohydrolase (yp_297560.1) from ralstonia eutropha jmp134 at 2.00 a resolution
36% identity, 95% coverage: 6:278/287 of query aligns to 4:277/280 of 2q7sB

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2q7sB
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Query Sequence

>3606958 FitnessBrowser__Dino:3606958
MMHTAYTLGLPQPCTTSVIFASPHSGRAYSKDFLRSTVLDTQTIRSSEDAFVDELIACAP
RYGAQTIAATAPRAYIDLNRNADELDPAVVSGLRRVTHNPRISSGLGVVPRVVANGRAIY
RGKMHLNEAKARLDAYWHPYHDQLRRMLDVTRNAFGQAILVDCHSMPHEAIDALHQHSEA
RPDVVLGDRFGAASAAHIVDQVEAAFKNAGLRVARNAPFAGAFIAQHYGRPSRNQHVVQI
EIDRALYMDEETISRGPQFRAFQRLMEQVISEVADFGRASQMPLAAE

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory