Comparing 3607786 FitnessBrowser__Dino:3607786 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
1us4A Putative glur0 ligand binding core with l-glutamate (see paper)
24% identity, 85% coverage: 35:316/330 of query aligns to 5:293/297 of 1us4A
Sites not aligning to the query:
>3607786 FitnessBrowser__Dino:3607786
MKFTLMTGTAMAVALSATVVTTATAQDRDGWPDSFTVGTASQGGTYFAYGSGWANLVAEE
LGLSGGGEVTGGPMQNMALVHTGDAQFGMTTMGPAAESLAGTNPIAPGLQMDNACAMFPM
YQTPFSVTALSSSGIASIADIPDGAKIGFGPAGSTSDTYFPRMMEALGVNFERRNGGWSD
LGGQLQDGLLDVIAFAAGVPVPAVSQLEVQTDINIIEFTEEEQAKIMADFPVSEFSIGAG
TYSTLEADARSVSMWNFAIANCDLPASFVKAATDVVMSDNARMVGIHKAARSTLPENWDK
NKVLKWHPGAAEWFKENAGADIPDDMIHGM
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory