Comparing 3607996 FitnessBrowser__Dino:3607996 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 9 hits to proteins with known functional sites (download)
3i09A Crystal structure of a periplasmic binding protein (bma2936) from burkholderia mallei at 1.80 a resolution
25% identity, 85% coverage: 45:427/451 of query aligns to 4:361/375 of 3i09A
3td9A Crystal structure of a leucine binding protein livk (tm1135) from thermotoga maritima msb8 at 1.90 a resolution
25% identity, 62% coverage: 98:375/451 of query aligns to 35:304/350 of 3td9A
Sites not aligning to the query:
4zpjA Abc transporter substrate-binding protein from sphaerobacter thermophilus
26% identity, 63% coverage: 100:382/451 of query aligns to 39:324/371 of 4zpjA
4mlcA Abc transporter substrate-binding protein fromdesulfitobacterium hafniense
21% identity, 70% coverage: 70:385/451 of query aligns to 23:317/336 of 4mlcA
7s6eB Crystal structure of urta from synechococcus cc9311 in complex with urea and calcium
21% identity, 65% coverage: 102:395/451 of query aligns to 54:344/400 of 7s6eB
Sites not aligning to the query:
8hicA Crystal structure of urta from prochlorococcus marinus str. Mit 9313 in complex with urea and calcium
22% identity, 83% coverage: 45:418/451 of query aligns to 4:359/395 of 8hicA
Sites not aligning to the query:
4gnrA 1.0 angstrom resolution crystal structure of the branched-chain amino acid transporter substrate binding protein livj from streptococcus pneumoniae str. Canada mdr_19a in complex with isoleucine
23% identity, 79% coverage: 45:399/451 of query aligns to 2:328/348 of 4gnrA
4q6wA Crystal structure of periplasmic binding protein type 1 from bordetella pertussis tohama i complexed with 3-hydroxy benzoic acid
28% identity, 34% coverage: 45:197/451 of query aligns to 3:146/376 of 4q6wA
Sites not aligning to the query:
4n0qB Crystal structure of an abc transporter, substrate-binding protein from brucella melitensis 16m in complex with l-leucine using a crystal grown in a crystal former (microlytic)
24% identity, 74% coverage: 46:377/451 of query aligns to 3:308/345 of 4n0qB
>3607996 FitnessBrowser__Dino:3607996
MSNSEISRRRVLKTGAATGAGLALPTIFTGAAWSAGFTNEPTGSTVTLGFNVPQSGPYAD
EGADELRAYELAVEHLNGGGDGGMMSTFSSKALQGNGILGKKVEYVTGDTQTKSDAARAS
ARSMIEKDGAVMITGGSSSGVAVAVQALCQEAGIIFMAGLTHSNDTTGKDRKANGFRHFF
NSYMSGAALAPILAKNYGTDRKAYHLTADYNWGYTTEEAVRSSTEAMGWETVNTVLTPLT
QTDFSAYITPVLQSDADVLVLNHYGGNMVNSLTNAVQFGLRDRVVNGKNFEIVVPLYSRL
MAKGAGANVKGIFGSTNWHWSLQDAGSQAFVRSFGTKYGFPPSQAAHTCYVQALLYADAV
ERAGSFNPCAVDEALSDFEFDGMGNGPTLYRAADHQCFKDVLVVRGKENPTSEFDLLEIV
EVTPVEQVTYAPDHPQFGGAEATLGTCNPGA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory