Comparing 3608576 FitnessBrowser__Dino:3608576 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
8b01B Cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in a nanodisc (see paper)
26% identity, 65% coverage: 237:686/688 of query aligns to 9:421/427 of 8b01B
>3608576 FitnessBrowser__Dino:3608576
MAVDIPQIEDPLETYEHILEHEERDRQPVAVALDNAVKGVGHVVMWANIALIAAIVAQVL
FRYLLNQNFPKLDEIQWHFYGAVTMIGISYALVTDSHVRVDLLHMQLSRRSQRIIEVLGI
LFLLVPLIYLMVDQGWDYFYESYRVNERSDSPTGLPLRWAFKAIIPISFVLLGIAAVARL
IHDAHALWVGYEDERPGRGLGVVLMALLAFAVVGFGLSFLVETTEEKLVVAMFITFIALL
FTGYPVAWVLSGVGVAYCGLAFLFDNDLMLWTGLEGTLTGLDYLTLGATVNRVYATMSNA
VLVALPMFIFMGLMLDESGVAERLMTSMQRLFGKTRGGLAITVTMIGIILAASTGIIGAS
VVLLGVLSLPAMMQQKYSPRLAAGVVSASGTLGILIPPSIMLVIMADQMALSVGDLFMAA
VFPGVIIGGLYLVYIFVISYLKPDVAPVPEGAQSPDWQAVKDVMVAVLPTLGLILAVLGS
IFAGICTPTEASGIGALGATLLALGYRKLTLHKLVNVLVSTFNTTAYIFAIFLGATVFSY
VLRELGGDALIEHMIAATGLGPNGTILFILFIVFLLGFVLDWIEITLIVLPLMRPIVNAL
GMDIPGFGVLDEPTLVWFVILVAVTLQTSFLTPPVGFALFYLKGVCPPEIKLLDIYKGII
PFVLLQLTGLALVFLLPALATWLPSVAY
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory