Comparing 3608607 FitnessBrowser__Dino:3608607 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3ma0A Closed liganded crystal structure of xylose binding protein from escherichia coli (see paper)
40% identity, 90% coverage: 22:327/340 of query aligns to 2:305/313 of 3ma0A
4ywhA Crystal structure of an abc transporter solute binding protein (ipr025997) from actinobacillus succinogenes 130z (asuc_0499, target efi-511068) with bound d-xylose
39% identity, 87% coverage: 22:318/340 of query aligns to 3:297/310 of 4ywhA
3uugA Crystal structure of the periplasmic sugar binding protein chve (see paper)
30% identity, 90% coverage: 24:328/340 of query aligns to 4:328/329 of 3uugA
3urmA Crystal structure of the periplasmic sugar binding protein chve (see paper)
30% identity, 90% coverage: 24:328/340 of query aligns to 4:328/329 of 3urmA
4ys6A Crystal structure of an abc transporter solute binding protein (ipr025997) from clostridium phytofermentans (cphy_1585, target efi- 511156) with bound beta-d-glucose
31% identity, 89% coverage: 25:328/340 of query aligns to 3:323/324 of 4ys6A
4wwhA Crystal structure of an abc transporter solute binding protein (ipr025997) from mycobacterium smegmatis (msmeg_1704, target efi- 510967) with bound d-galactose
32% identity, 89% coverage: 24:325/340 of query aligns to 4:325/329 of 4wwhA
4rxuA Crystal structure of carbohydrate transporter solute binding protein caur_1924 from chloroflexus aurantiacus, target efi-511158, in complex with d-glucose
31% identity, 86% coverage: 23:316/340 of query aligns to 4:323/340 of 4rxuA
P23905 D-galactose/methyl-galactoside binding periplasmic protein MglB; D-galactose-binding periplasmic protein; GBP; D-galactose/D-glucose-binding protein; GGBP from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 2 papers)
29% identity, 86% coverage: 1:291/340 of query aligns to 1:307/332 of P23905
P0AEE5 D-galactose/methyl-galactoside binding periplasmic protein MglB; D-galactose-binding periplasmic protein; GBP; D-galactose/D-glucose-binding protein; GGBP from Escherichia coli (strain K12) (see 4 papers)
27% identity, 86% coverage: 1:291/340 of query aligns to 1:307/332 of P0AEE5
1gcaA The 1.7 angstroms refined x-ray structure of the periplasmic glucose(slash)galactose receptor from salmonella typhimurium (see paper)
29% identity, 80% coverage: 21:291/340 of query aligns to 1:284/309 of 1gcaA
4yo7A Crystal structure of an abc transporter solute binding protein (ipr025997) from bacillus halodurans c-125 (bh2323, target efi- 511484) with bound myo-inositol
29% identity, 81% coverage: 25:298/340 of query aligns to 9:281/287 of 4yo7A
3ga5A X-ray structure of glucose/galactose receptor from salmonella typhimurium in complex with (2r)-glyceryl-beta-d-galactopyranoside (see paper)
29% identity, 74% coverage: 42:291/340 of query aligns to 16:282/305 of 3ga5A
Sites not aligning to the query:
2gbpA Sugar and signal-transducer binding sites of the escherichia coli galactose chemoreceptor protein (see paper)
28% identity, 80% coverage: 21:291/340 of query aligns to 1:284/309 of 2gbpA
2qw1A Glucose/galactose binding protein bound to 3-o-methyl d-glucose (see paper)
27% identity, 79% coverage: 22:291/340 of query aligns to 1:283/305 of 2qw1A
6ruxA P46, an immunodominant surface protein from mycoplasma hyopneumoniae (see paper)
25% identity, 69% coverage: 82:314/340 of query aligns to 70:369/373 of 6ruxA
6s3tA P46, an immunodominant surface protein from mycoplasma hyopneumoniae (see paper)
25% identity, 69% coverage: 82:314/340 of query aligns to 72:371/374 of 6s3tA
Sites not aligning to the query:
2ioyA Crystal structure of thermoanaerobacter tengcongensis ribose binding protein (see paper)
31% identity, 74% coverage: 24:273/340 of query aligns to 2:248/274 of 2ioyA
4rxmA Crystal structure of periplasmic abc transporter solute binding protein a7jw62 from mannheimia haemolytica phl213, target efi-511105, in complex with myo-inositol
32% identity, 57% coverage: 59:252/340 of query aligns to 41:235/291 of 4rxmA
Sites not aligning to the query:
8fxtA Escherichia coli periplasmic glucose-binding protein glucose complex: acrylodan conjugate attached at w183c (see paper)
28% identity, 82% coverage: 14:291/340 of query aligns to 5:283/305 of 8fxtA
Sites not aligning to the query:
4rxmB Crystal structure of periplasmic abc transporter solute binding protein a7jw62 from mannheimia haemolytica phl213, target efi-511105, in complex with myo-inositol
32% identity, 57% coverage: 59:252/340 of query aligns to 39:233/288 of 4rxmB
Sites not aligning to the query:
>3608607 FitnessBrowser__Dino:3608607
MRKAILAAAIVAAGVTTSAYADVTVGVSWSNFQEERWKTDEAAIKAALEAAGATYVSADA
QSSSAKQLSDVESLIAQGVDALIILAQDSQAIGPAVQAAADEGIPVVGYDRLIEDPRAFY
LTFDNVEVGRMQARAVLEQAPEGNYVMIKGSPTDPNADFLRGGQQEILQDAIDAGKITIV
GEAYTDGWLPANAQRNMEQILTAQDNQVDAVVASNDGTAGGVVAALTAQGMEGIPVSGQD
GDHAALNRVAKGTQTVSVWKDARDLGRAAGEIAVAMANGTAMADIEGATSWTSPGGTELT
ARFLAPVPVTADNLTAVVDAQWITQETLCQGVTDGPAPCN
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory