Comparing 3608656 FitnessBrowser__Dino:3608656 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
7d0aB Acinetobacter mlafedb complex in adp-vanadate trapped vclose conformation (see paper)
40% identity, 93% coverage: 6:247/259 of query aligns to 2:242/263 of 7d0aB
7d08B Acinetobacter mlafedb complex in atp-bound vtrans1 conformation (see paper)
40% identity, 93% coverage: 6:247/259 of query aligns to 2:242/263 of 7d08B
6z5uK Cryo-em structure of the a. Baumannii mlabdef complex bound to appnhp (see paper)
41% identity, 93% coverage: 7:247/259 of query aligns to 1:240/253 of 6z5uK
7chaI Cryo-em structure of p.Aeruginosa mlafebd with amppnp (see paper)
38% identity, 92% coverage: 9:247/259 of query aligns to 4:241/262 of 7chaI
7ch8I Cryo-em structure of p.Aeruginosa mlafebd with adp-v (see paper)
36% identity, 92% coverage: 9:247/259 of query aligns to 4:238/259 of 7ch8I
Q9AT00 Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic; ABC transporter I family member 13; ABC transporter ABCI.13; AtABCI13; Non-intrinsic ABC protein 11; AtNAP11 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
36% identity, 93% coverage: 8:247/259 of query aligns to 84:337/345 of Q9AT00
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
35% identity, 90% coverage: 8:239/259 of query aligns to 1:232/343 of P30750
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
35% identity, 90% coverage: 7:239/259 of query aligns to 1:233/344 of 6cvlD
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
35% identity, 90% coverage: 7:239/259 of query aligns to 1:233/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
35% identity, 90% coverage: 7:239/259 of query aligns to 1:233/344 of 3tuiC
7ch6C Cryo-em structure of e.Coli mlafeb with amppnp (see paper)
35% identity, 94% coverage: 5:247/259 of query aligns to 1:242/265 of 7ch6C
6xgyA Crystal structure of e. Coli mlafb abc transport subunits in the dimeric state (see paper)
35% identity, 94% coverage: 5:247/259 of query aligns to 1:242/264 of 6xgyA
7cgnB The overall structure of the mlafedb complex in atp-bound eqtall conformation (mutation of e170q on mlaf) (see paper)
35% identity, 94% coverage: 5:247/259 of query aligns to 1:242/263 of 7cgnB
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
33% identity, 81% coverage: 26:234/259 of query aligns to 44:251/382 of 7ahhC
Sites not aligning to the query:
7aheC Opua inhibited inward facing (see paper)
33% identity, 81% coverage: 26:234/259 of query aligns to 44:251/382 of 7aheC
Sites not aligning to the query:
7ahdC Opua (e190q) occluded (see paper)
33% identity, 81% coverage: 26:234/259 of query aligns to 44:251/260 of 7ahdC
Sites not aligning to the query:
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
33% identity, 88% coverage: 8:234/259 of query aligns to 1:224/240 of 4ymuJ
4yerA Crystal structure of an abc transporter atp-binding protein (tm_1403) from thermotoga maritima msb8 at 2.35 a resolution
31% identity, 90% coverage: 5:236/259 of query aligns to 1:226/285 of 4yerA
7z18I E. Coli c-p lyase bound to a phnk abc dimer and atp (see paper)
35% identity, 85% coverage: 26:244/259 of query aligns to 21:239/250 of 7z18I
Sites not aligning to the query:
7z15I E. Coli c-p lyase bound to a phnk/phnl dual abc dimer and adp + pi (see paper)
35% identity, 85% coverage: 26:244/259 of query aligns to 21:239/253 of 7z15I
Sites not aligning to the query:
>3608656 FitnessBrowser__Dino:3608656
MAEPVENVIRVRGVRTQFGTHVVHEDLDLDVRRGEILGVVGGSGTGKSVLLRTIAGLLRP
AAGRVEVLGTDMLSADEATRAAVEARWGVMFQDGALFSSLTVRENVEVPMRAIPGLDAAT
RRALAALKVSMVGLPPVAEDKYPSELSGGMRKRAGLARALALDPEIVFLDEPTAGLDPIG
AADFDTLIKGLSTDLGLTVFLVTHDLDTLHAICDRIAVLAERKVLVTGTMDEMLKVDHPW
VHAYFHGPRARAALETAGG
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory