SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 3608896 FitnessBrowser__Dino:3608896 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

8b01B Cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in a nanodisc (see paper)
24% identity, 32% coverage: 185:387/639 of query aligns to 60:260/427 of 8b01B

query
sites
8b01B
F
 
F
L
 
V
I
 
L
L
 
T
G
 
G
A
 
H
V
 
L
L
 
M
Q
 
N
Q
 
S
T
 
A
G
 
G
A
 
I
G
 
T
E
 
E
S
 
R
L
 
I
I
 
F
R
 
N
L
 
F
S
 
A
T
 
K
A
 
A
L
 
M
L
 
V
G
 
G
R
 
H
V
 
I
R
 
T
G
 
G
G
 
S
G
 
L
A
 
G
H
 
H
A
 
V
A
 
N
I
 
I
A
 
L
A
 
A
S
 
S
A
 
L
V
 
L
F
 
F
G
x
S
M
 
G
M
 
M
N
x
S
G
|
G
S
 
S
V
 
A
A
 
L
A
 
A
N
 
D
I
 
A
A
 
G
G
 
G
T
 
L
G
 
G
V
 
Q
F
 
L
T
 
E
I
 
I
P
 
K
M
 
S
I
 
M
K
 
R
R
 
D
Q
 
A
G
 
K
F
 
Y
S
 
D
S
 
D
R
 
D
F
 
F
A
 
A
G
 
G
A
 
G
V
 
L
E
 
T
A
 
A
A
 
A
A
 
S
S
 
C
S
 
I
G
 
I
G
|
G
Q
 
P
L
 
L
T
x
V
P
|
P
P
|
P
I
 
S
M
 
I
A
 
P
A
 
L
T
 
V
V
 
I
F
 
Y
V
 
G
M
 
V
A
 
V
D
 
S
L
 
N
V
 
T
G
 
S
L
 
I
P
 
G
L
 
A
L
 
L
M
 
F
V
 
L
I
 
-
A
 
-
A
 
A
A
 
G
A
 
A
L
 
I
P
 
P
A
 
G
L
 
L
F
 
L
K
 
C
Y
 
C
L
 
I
G
 
A
L
 
L
F
 
C
A
 
I
Q
 
M
V
 
T
Y
 
Y
V
 
F
E
 
I
A
 
A
L
 
-
R
 
-
L
 
-
D
 
-
I
 
-
R
 
K
P
 
K
L
 
R
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G
A
 
Y
E
 
M
D
 
T
I
 
L
P
 
P
K
 
R
L
 
A
T
 
S
R
 
R
Q
 
K
D
 
E
W
 
R
L
 
L
-
 
I
-
 
A
-
 
F
Q
 
R
S
 
D
A
 
A
L
 
F
-
 
L
-
 
S
V
 
L
L
 
L
V
 
T
P
 
P
L
 
F
A
 
I
V
 
I
L
 
I
M
 
G
I
 
G
A
 
I
F
 
F
L
 
S
S
 
G
G
 
K
S
 
F
S
 
T
P
 
P
A
 
T
M
 
E
A
 
A
G
 
A
L
 
I
A
 
I
G
 
S
T
 
S
I
 
L
A
 
Y
A
 
A
L
 
L
V
 
F
T
 
L
G
 
G
L
 
T
V
 
V
L
 
V
T
 
Y
P
 
K
Q
 
S
L
 
L
R
 
T
Q
 
M
Q
 
D

Sites not aligning to the query:

Query Sequence

>3608896 FitnessBrowser__Dino:3608896
MNQPATIPVANPAPAGGLGAPLGGLFALLVICVIAFATLDEATARFGAIALSVAIVGLAH
PARRGRPSGRAVDAALLAGFGCAGWWFHAVKAELWTGFFVATPLSVLAGLAGVFTVIVLA
ARVWGRSLAILAGALILYAFGGPYLPNAVAHFGVGLGDFVQITWYSFDGVFGRMTGLVAS
NLLIFLILGAVLQQTGAGESLIRLSTALLGRVRGGGAHAAIAASAVFGMMNGSVAANIAG
TGVFTIPMIKRQGFSSRFAGAVEAAASSGGQLTPPIMAATVFVMADLVGLPLLMVIAAAA
LPALFKYLGLFAQVYVEALRLDIRPLAAEDIPKLTRQDWLQSALVLVPLAVLMIAFLSGS
SPAMAGLAGTIAALVTGLVLTPQLRQQPIRIWWALCAGGLASARILLSVAVIGIVLAVVN
ETGIAIRFAVALSEVGDAYLPLALLMAMLGALVLGMGLPTLPAYLIVAIMIVPTLIEAGV
LPLAAHMFVLYFAVFSSIMPPIAYGCFVAAPIAGADALRISFTALRISIVGLIVPFAFVY
APSLLLVAGSFSWAELLTTALRLSLASWLLATALGGADPVLGRLPRHNRMLRGGAACAVM
VPTVALWGPGLALGIAMGVLHPLHRAGWIKRVSLRAHGT

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory